BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0104000 Os05g0104000|J023061K12
(114 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25500.1 | chr3:9251320-9254826 REVERSE LENGTH=1052 98 1e-21
AT5G67470.1 | chr5:26926835-26930212 FORWARD LENGTH=900 89 6e-19
AT2G43800.1 | chr2:18145721-18148721 FORWARD LENGTH=895 86 5e-18
AT5G48360.1 | chr5:19595716-19598331 FORWARD LENGTH=783 78 9e-16
AT3G07540.1 | chr3:2404763-2407464 REVERSE LENGTH=842 73 3e-14
AT4G15200.1 | chr4:8662993-8665759 REVERSE LENGTH=765 72 4e-14
AT3G05470.1 | chr3:1579667-1582547 REVERSE LENGTH=885 70 1e-13
AT5G54650.1 | chr5:22197856-22201649 REVERSE LENGTH=901 67 2e-12
>AT3G25500.1 | chr3:9251320-9254826 REVERSE LENGTH=1052
Length = 1051
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/82 (60%), Positives = 57/82 (69%)
Query: 32 GNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMDA 91
GNA LG E L L++M T EEE KLK + DD KL E FLKA+LDIPFAFKR+DA
Sbjct: 694 GNADTLGTELLESLLKMAPTKEEERKLKAYNDDSPVKLGHAEKFLKAMLDIPFAFKRVDA 753
Query: 92 MLYVANFYLEVNQLRMSYATLE 113
MLYVANF EV L+ S+ TLE
Sbjct: 754 MLYVANFESEVEYLKKSFETLE 775
>AT5G67470.1 | chr5:26926835-26930212 FORWARD LENGTH=900
Length = 899
Score = 88.6 bits (218), Expect = 6e-19, Method: Composition-based stats.
Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 32 GNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMDA 91
GN LG E L L++M T EEE+KL+ + D+S KL E FLK +LDIPFAFKR++A
Sbjct: 556 GNPESLGAELLETLVKMAPTKEEEIKLREYSGDVS-KLGTAERFLKTILDIPFAFKRVEA 614
Query: 92 MLYVANFYLEVNQLRMSYATLE 113
MLY ANF EV LR S+ TLE
Sbjct: 615 MLYRANFDAEVKYLRNSFQTLE 636
>AT2G43800.1 | chr2:18145721-18148721 FORWARD LENGTH=895
Length = 894
Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 32 GNAHGLGVEALRMLMQMVLTNEEELKLKYFKDD---LSTKLCPVEAFLKAVLDIPFAFKR 88
GN+ LG E L L++M T EEE KLK KDD +K+ P E FLKA+L+IPFAFKR
Sbjct: 538 GNSDTLGPELLECLLKMAPTKEEEDKLKELKDDDDGSPSKIGPAEKFLKALLNIPFAFKR 597
Query: 89 MDAMLYVANFYLEVNQLRMSYATLE 113
+DAMLY+ F E+ L S+ TLE
Sbjct: 598 IDAMLYIVKFESEIEYLNRSFDTLE 622
>AT5G48360.1 | chr5:19595716-19598331 FORWARD LENGTH=783
Length = 782
Score = 78.2 bits (191), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 3/87 (3%)
Query: 28 LLDIGNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFK 87
LLD G+ LG E L L ++ + EEE KLK F D +++ P E FLK +L +PF FK
Sbjct: 496 LLD-GDCDVLGAELLECLSRLAPSKEEERKLKSFSD--GSEIGPAERFLKELLHVPFVFK 552
Query: 88 RMDAMLYVANFYLEVNQLRMSYATLEV 114
R+DA+L+VANF+ E+ +LR S++ ++V
Sbjct: 553 RVDALLFVANFHSEIKRLRKSFSVVQV 579
>AT3G07540.1 | chr3:2404763-2407464 REVERSE LENGTH=842
Length = 841
Score = 73.2 bits (178), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 53/82 (64%)
Query: 32 GNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMDA 91
G+ LGVE L L ++ + EEE KL + DD KL P E FLK +L++PF FKR+DA
Sbjct: 557 GHYDALGVELLESLARVAPSEEEEKKLISYSDDSVIKLAPSERFLKELLNVPFVFKRVDA 616
Query: 92 MLYVANFYLEVNQLRMSYATLE 113
+L VA+F +V L+ S++ ++
Sbjct: 617 LLSVASFDSKVKHLKRSFSVIQ 638
>AT4G15200.1 | chr4:8662993-8665759 REVERSE LENGTH=765
Length = 764
Score = 72.4 bits (176), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 31 IGNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMD 90
I + L VE L+ L++M T+EEELKL+ + DL L P E FLK ++DIPFAFKR++
Sbjct: 423 IKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHL-LGPAERFLKILVDIPFAFKRIE 481
Query: 91 AMLYVANFYLEVNQLRMSYATLEV 114
++L++ + EV+ L+ + TLEV
Sbjct: 482 SLLFMISLQEEVSGLKEALGTLEV 505
>AT3G05470.1 | chr3:1579667-1582547 REVERSE LENGTH=885
Length = 884
Score = 70.5 bits (171), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 31 IGNAHGLGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMD 90
+G GL ++ L L++MV T EEELKL+ +K + +L E FL+A++ +PFAF+R +
Sbjct: 559 LGKGEGLCLQQLEALVKMVPTKEEELKLRSYKGAVD-ELGSAEKFLRALVGVPFAFQRAE 617
Query: 91 AMLYVANFYLEVNQLRMSYATLE 113
AMLY F EV LR S++ LE
Sbjct: 618 AMLYRETFEDEVVHLRNSFSMLE 640
>AT5G54650.1 | chr5:22197856-22201649 REVERSE LENGTH=901
Length = 900
Score = 67.0 bits (162), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 37 LGVEALRMLMQMVLTNEEELKLKYFKDDLSTKLCPVEAFLKAVLDIPFAFKRMDAMLYVA 96
L VE ++ L++M T EEELKL+ + +++ +L E FLKAV+DIPFAFKR++A+L++
Sbjct: 540 LPVEFIQTLLKMAPTPEEELKLRLYCGEIA-QLGSAERFLKAVVDIPFAFKRLEALLFMC 598
Query: 97 NFYLEVNQLRMSYATLEV 114
+ E+ ++ S+ LEV
Sbjct: 599 TLHEEMAFVKESFQKLEV 616
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,278,482
Number of extensions: 75707
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 8
Length of query: 114
Length of database: 11,106,569
Length adjustment: 83
Effective length of query: 31
Effective length of database: 8,831,041
Effective search space: 273762271
Effective search space used: 273762271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)