Os05g0103500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CHCH domain containing protein.
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Os05g0103500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CHCH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.7 | 0.338 | 9.76 | -0.591 | 0.456 | -0.202 | 0.599 | -3.19 | -0.259 | 13.3 | 29.9 | 4325 | -- | -- |
| 54.66 | 0.344 | 9.77 | -1.03 | 0.421 | -0.526 | 0.545 | -- | -0.191 | 12.8 | 30.02 | 4372 | -- | -- |
| 53.09 | 0.339 | 9.76 | -0.599 | 0.452 | -0.212 | -- | -3.01 | -0.259 | 13.1 | 29.83 | 4358 | -- | -- |
| 53.6 | 0.341 | 9.85 | -1.1 | 0.395 | -0.555 | -- | -- | -0.39 | 12.7 | 28.8 | 4685 | -- | -- |
| 63.37 | 0.373 | 9.84 | -0.993 | -- | -0.368 | -- | -0.688 | -0.376 | -- | 28.8 | 4645 | -- | -- |
| 64.3 | 0.376 | 9.84 | -1.01 | 0.412 | -- | 0.499 | -- | -0.37 | 13.2 | -- | -- | -- | -- |
| 65.29 | 0.378 | 9.84 | -0.995 | 0.411 | -- | -- | -- | -0.368 | 12.9 | -- | -- | -- | -- |
| 64.14 | 0.375 | 9.85 | -1.09 | -- | -0.402 | -- | -- | -0.401 | -- | 28.8 | 4645 | -- | -- |
| 87.24 | 0.435 | 9.81 | -- | 0.43 | -0.327 | -- | -- | -0.268 | 12.6 | 28.7 | 4802 | -- | -- |
| 75.81 | 0.407 | 9.84 | -1.01 | -- | -- | -- | -- | -0.376 | -- | -- | -- | -- | -- |
| 91.4 | 0.447 | 9.81 | -- | 0.427 | -- | -- | -- | -0.257 | 13 | -- | -- | -- | -- |
| 95.09 | 0.456 | 9.82 | -- | -- | -0.324 | -- | -- | -0.277 | -- | 28.7 | 4690 | -- | -- |
| 102.75 | 0.473 | 9.82 | -- | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.43 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 48.74 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 4 | 48.75 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 5 | 48.76 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 9 | 48.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 17 | 48.90 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 32 | 49.13 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 49.63 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 55 | 49.68 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 60 | 49.86 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 61 | 49.87 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 66 | 49.90 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 78 | 49.96 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 147 | 50.29 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 183 | 50.47 | temperature | 30.0 | 4320 | < th | dose independent | sin | 8 | NA |
| 186 | 50.51 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 187 | 50.52 | temperature | 30.0 | 4320 | > th | dose independent | sin | 8 | NA |
| 219 | 50.67 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 220 | 50.68 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 239 | 50.68 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 260 | 50.73 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 263 | 50.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 3 |
| 331 | 50.91 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 346 | 50.99 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 351 | 51.01 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 367 | 51.07 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 385 | 51.09 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 391 | 51.11 | temperature | 30.0 | 4320 | > th | dose dependent | sin | 8 | NA |
| 417 | 51.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 435 | 51.21 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 17 |
| 469 | 51.23 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 474 | 51.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 531 | 51.31 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 544 | 51.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 545 | 51.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 608 | 51.43 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 627 | 51.46 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 632 | 51.47 | humidity | 80.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 637 | 51.48 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 735 | 51.54 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 745 | 51.55 | temperature | 25.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 793 | 51.59 | humidity | 80.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 815 | 51.60 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 904 | 51.69 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 906 | 51.70 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 1 |