BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0103500 Os05g0103500|AK060306
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12340.1  | chr4:7321492-7322004 REVERSE LENGTH=171            103   7e-23

>AT4G12340.1 | chr4:7321492-7322004 REVERSE LENGTH=171
          Length = 170

 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 93/175 (53%), Gaps = 9/175 (5%)

Query: 1   MGDYTIQISTKLIDQLARDDEXXXXXXXXXXXXXXXXQHQQEPQDNSRELPASEPKAPPG 60
           MGD++IQIS+KLI+QLA  ++                  Q+  QD  ++     P     
Sbjct: 1   MGDFSIQISSKLINQLAEGNDQPKRRAKKTKPKVSPQSKQKTNQDEEKK-----PNPVAE 55

Query: 61  WPLQXXXXXXXXXXXXXXXXAFSELEAIRAVLEESEKVQEKLDKQHAGMRDELIKKSKDL 120
            P+Q                A +ELE+I++V++ESEKV EKL+ Q   +  E+ +++KDL
Sbjct: 56  LPMQPPFFFPIPPQGA----ASTELESIKSVVKESEKVLEKLELQEKNIVREVTERAKDL 111

Query: 121 RDKEFKLPYQNPTPCTEERSNCRQCYVSNAQDPLKCAEAVKRFEACVRLARQRGN 175
           R+KEFK+P   P PC+ +     +CY  N   PLKC+  VK F+ C R +RQ+ N
Sbjct: 112 REKEFKIPEPKPMPCSSDHEAWMKCYKENIGSPLKCSGFVKSFQDCARRSRQQVN 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.128    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,194,133
Number of extensions: 107709
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)