FiT-DB / Search/ Help/ Sample detail

Os05g0100900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0131) R2 : 0.175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.271 (0.0275) R2dN8 : 0.227 R2N8 : 0.175
σ : 0.246
deviance : 27.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.86 0.193 10.5 -0.079 0.396 -0.548 -0.0417 -1.07 0.185 6.62 26.3 211 -- --
18.36 0.2 10.6 -0.258 0.397 -0.497 -0.233 -- 0.143 6.39 27.4 151 -- --
16.86 0.191 10.5 -0.0809 0.396 -0.549 -- -1.06 0.184 6.58 26.36 202 -- --
18.5 0.2 10.6 -0.258 0.397 -0.496 -- -- 0.144 6.43 27.41 152 -- --
23.67 0.227 10.5 -0.0728 -- -0.484 -- -1.06 0.224 -- 24.2 168 -- --
21.85 0.219 10.5 -0.129 0.32 -- -0.168 -- 0.252 7.55 -- -- -- --
21.93 0.219 10.5 -0.133 0.319 -- -- -- 0.252 7.64 -- -- -- --
24.89 0.233 10.6 -0.211 -- -0.369 -- -- 0.18 -- 25.7 17 -- --
20.06 0.21 10.6 -- 0.346 -0.383 -- -- 0.194 6.4 27.41 152 -- --
27.4 0.245 10.5 -0.129 -- -- -- -- 0.257 -- -- -- -- --
22.39 0.221 10.5 -- 0.318 -- -- -- 0.267 7.67 -- -- -- --
25.97 0.238 10.6 -- -- -0.305 -- -- 0.215 -- 25.9 6 -- --
27.83 0.246 10.5 -- -- -- -- -- 0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.16 temperature 20.0 90 > th dose dependent sin 7 NA
2 16.31 temperature 10.0 90 > th dose dependent sin 6 NA
4 16.34 temperature 20.0 270 > th dose dependent rect. 18 17
8 16.38 temperature 30.0 90 < th dose dependent sin 6 NA
20 16.53 temperature 30.0 10 < th dose dependent sin 5 NA
23 16.54 temperature 25.0 90 < th dose dependent rect. 24 23
46 16.75 temperature 30.0 90 < th dose dependent rect. 1 16
51 16.78 temperature 20.0 10 > th dose dependent rect. 21 15
90 16.94 temperature 30.0 10 < th dose dependent rect. 1 17
154 17.11 temperature 30.0 10 < th dose dependent rect. 1 23
175 17.20 temperature 20.0 10 > th dose dependent rect. 23 13
178 17.20 temperature 20.0 10 > th dose dependent rect. 19 21
182 17.21 temperature 25.0 270 < th dose dependent no NA NA
186 17.21 temperature 10.0 270 > th dose dependent rect. 4 21
195 17.22 temperature 25.0 270 < th dose dependent rect. 8 23
205 17.25 temperature 25.0 720 < th dose dependent rect. 6 17
208 17.25 temperature 25.0 270 < th dose dependent rect. 17 23
210 17.26 temperature 25.0 270 < th dose dependent rect. 15 23
223 17.28 temperature 25.0 270 < th dose dependent rect. 11 23
224 17.29 temperature 25.0 90 > th dose independent rect. 17 23
243 17.33 temperature 25.0 720 < th dose dependent rect. 6 19
262 17.36 temperature 25.0 1440 < th dose dependent rect. 17 3
276 17.39 temperature 25.0 270 < th dose independent rect. 22 21
283 17.40 temperature 25.0 90 < th dose independent rect. 23 23
291 17.41 temperature 30.0 270 < th dose dependent rect. 23 11
299 17.41 temperature 30.0 10 < th dose dependent rect. 9 23
301 17.42 temperature 15.0 90 > th dose dependent rect. 7 18
308 17.43 temperature 25.0 90 > th dose independent rect. 19 20
318 17.43 temperature 15.0 10 > th dose dependent rect. 13 23
330 17.45 temperature 20.0 10 > th dose dependent rect. 21 19
368 17.49 temperature 30.0 10 < th dose dependent rect. 11 23
369 17.49 temperature 30.0 10 < th dose dependent rect. 13 23
373 17.50 temperature 30.0 10 < th dose dependent no NA NA
402 17.52 temperature 30.0 10 < th dose dependent rect. 15 23
414 17.53 temperature 25.0 270 < th dose dependent rect. 3 23
417 17.54 temperature 25.0 90 > th dose independent sin 6 NA
418 17.54 temperature 25.0 90 < th dose independent sin 6 NA
421 17.54 temperature 25.0 720 < th dose dependent sin 21 NA
424 17.54 temperature 15.0 10 > th dose dependent rect. 7 18
441 17.55 temperature 30.0 10 < th dose dependent rect. 21 23
482 17.59 atmosphere 995.0 14400 > th dose independent rect. 18 2
529 17.61 temperature 30.0 10 < th dose dependent rect. 19 23
567 17.64 atmosphere 995.0 14400 > th dose independent rect. 15 5
568 17.64 atmosphere 995.0 14400 > th dose independent rect. 13 7
580 17.64 temperature 30.0 10 < th dose dependent rect. 3 23
649 17.69 atmosphere 995.0 14400 > th dose independent rect. 10 10
651 17.69 temperature 20.0 270 > th dose independent rect. 3 22
663 17.69 temperature 30.0 10 < th dose dependent rect. 17 23
668 17.70 temperature 20.0 10 > th dose dependent rect. 7 20
670 17.71 precipitation 0.1 4320 < th dose independent rect. 17 1
674 17.71 atmosphere 995.0 14400 > th dose independent rect. 8 12
678 17.71 temperature 25.0 90 > th dose independent rect. 13 23
680 17.71 precipitation 0.1 4320 < th dose dependent rect. 17 1
722 17.74 atmosphere 995.0 14400 < th dose independent rect. 15 4
730 17.74 temperature 30.0 90 < th dose dependent rect. 1 10
786 17.76 temperature 10.0 10 > th dose dependent no NA NA
814 17.77 atmosphere 995.0 14400 < th dose dependent rect. 15 4
821 17.77 temperature 30.0 10 < th dose dependent rect. 3 15
847 17.79 temperature 25.0 90 < th dose independent no NA NA
949 17.83 temperature 25.0 90 < th dose independent rect. 11 23
950 17.83 temperature 25.0 90 < th dose independent rect. 17 23
975 17.83 temperature 30.0 10 < th dose dependent rect. 7 23
991 17.84 temperature 25.0 90 < th dose independent rect. 9 23