BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0100900 Os05g0100900|J065067G01
         (46 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23490.1  | chr5:7919831-7926499 FORWARD LENGTH=730             61   1e-10
AT5G08440.2  | chr5:2721037-2726970 FORWARD LENGTH=773             52   5e-08

>AT5G23490.1 | chr5:7919831-7926499 FORWARD LENGTH=730
          Length = 729

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 33/38 (86%)

Query: 1   AAHQERSTFVSSLLPLLTEYNLQPSVLDAQSIVSNLKV 38
           A  QERSTFVS LLPLL+EY+LQP V DAQSIVSN+KV
Sbjct: 286 ATQQERSTFVSYLLPLLSEYSLQPQVSDAQSIVSNVKV 323



>AT5G08440.2 | chr5:2721037-2726970 FORWARD LENGTH=773
          Length = 772

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query: 1   AAHQERSTFVSSLLPLLTEYNLQPSVLDAQSIVSNLKV 38
           AA QERS FVS LLPLL+EY+L P + D+QSIVS++K+
Sbjct: 299 AAEQERSLFVSILLPLLSEYSLHPQISDSQSIVSSVKI 336



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.126    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 817,334
Number of extensions: 17465
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 46
Length of database: 11,106,569
Length adjustment: 20
Effective length of query: 26
Effective length of database: 10,558,249
Effective search space: 274514474
Effective search space used: 274514474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)