Os04g0691500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os04g0691500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.67 | 0.146 | 11.5 | -0.0204 | 0.125 | -0.197 | -0.22 | -0.0333 | 0.313 | 3.58 | 10.47 | 1326 | -- | -- |
| 9.66 | 0.145 | 11.5 | -0.0177 | 0.125 | -0.199 | -0.228 | -- | 0.314 | 3.48 | 10.45 | 1313 | -- | -- |
| 9.81 | 0.146 | 11.5 | -0.0207 | 0.125 | -0.196 | -- | -0.0299 | 0.313 | 3.47 | 10.5 | 1316 | -- | -- |
| 9.82 | 0.146 | 11.5 | -0.0159 | 0.126 | -0.204 | -- | -- | 0.318 | 3.53 | 10.5 | 1315 | -- | -- |
| 10.44 | 0.15 | 11.5 | -0.0233 | -- | -0.185 | -- | -0.0372 | 0.309 | -- | 30.39 | 1948 | -- | -- |
| 10.8 | 0.154 | 11.5 | -0.0712 | 0.112 | -- | -0.249 | -- | 0.26 | 4.38 | -- | -- | -- | -- |
| 10.95 | 0.155 | 11.5 | -0.0689 | 0.112 | -- | -- | -- | 0.262 | 4.93 | -- | -- | -- | -- |
| 10.18 | 0.149 | 11.5 | -0.00912 | -- | -0.209 | -- | -- | 0.316 | -- | 21.15 | 1868 | -- | -- |
| 9.82 | 0.146 | 11.5 | -- | 0.124 | -0.204 | -- | -- | 0.319 | 3.54 | 10.46 | 1316 | -- | -- |
| 11.62 | 0.159 | 11.5 | -0.0647 | -- | -- | -- | -- | 0.265 | -- | -- | -- | -- | -- |
| 11.07 | 0.156 | 11.5 | -- | 0.111 | -- | -- | -- | 0.269 | 4.95 | -- | -- | -- | -- |
| 10.17 | 0.149 | 11.5 | -- | -- | -0.215 | -- | -- | 0.321 | -- | 20.28 | 1868 | -- | -- |
| 11.73 | 0.16 | 11.5 | -- | -- | -- | -- | -- | 0.272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.42 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 2 | 9.42 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 4 | 9.42 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 13 | 9.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 38 | 9.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 45 | 9.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 47 | 9.52 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 53 | 9.52 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 57 | 9.53 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 63 | 9.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 65 | 9.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 68 | 9.53 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 70 | 9.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 72 | 9.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 16 |
| 73 | 9.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 76 | 9.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 80 | 9.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 84 | 9.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 94 | 9.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 98 | 9.55 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 108 | 9.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 113 | 9.55 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 114 | 9.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 7 |
| 137 | 9.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 144 | 9.57 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 1 | NA |
| 145 | 9.57 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 1 | NA |
| 146 | 9.57 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 147 | 9.57 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 148 | 9.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 149 | 9.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 152 | 9.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 153 | 9.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 160 | 9.57 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 170 | 9.57 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 1 | NA |
| 176 | 9.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 178 | 9.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 186 | 9.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 193 | 9.58 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 194 | 9.58 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 212 | 9.58 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 214 | 9.58 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 235 | 9.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 237 | 9.59 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 240 | 9.59 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 248 | 9.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 260 | 9.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 265 | 9.59 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 268 | 9.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 286 | 9.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 288 | 9.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 292 | 9.60 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 309 | 9.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 314 | 9.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 316 | 9.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 318 | 9.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 321 | 9.60 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 331 | 9.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 332 | 9.60 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 333 | 9.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 362 | 9.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 11 | 9 |
| 366 | 9.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 10 |
| 374 | 9.61 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 375 | 9.61 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 381 | 9.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 390 | 9.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 391 | 9.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 419 | 9.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 421 | 9.61 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 444 | 9.61 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 446 | 9.61 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 451 | 9.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 475 | 9.61 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 499 | 9.62 | humidity | 80.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 500 | 9.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 502 | 9.62 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 505 | 9.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 535 | 9.62 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 551 | 9.62 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 562 | 9.62 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 4 | NA |
| 565 | 9.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 566 | 9.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 621 | 9.62 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 634 | 9.62 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 8 | 20 |
| 637 | 9.62 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 23 | 21 |
| 641 | 9.63 | temperature | 20.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 646 | 9.63 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 648 | 9.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 698 | 9.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 723 | 9.63 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 728 | 9.63 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 729 | 9.63 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 733 | 9.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 753 | 9.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 767 | 9.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 16 |
| 789 | 9.63 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 793 | 9.64 | temperature | 20.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 798 | 9.64 | temperature | 20.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 809 | 9.64 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 810 | 9.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 937 | 9.64 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 958 | 9.64 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 963 | 9.64 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 969 | 9.64 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |