Os04g0690800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 22 kDa protein of photosystem II.
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Os04g0690800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 22 kDa protein of photosystem II.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 319.87 | 0.84 | 11.6 | 1.54 | 0.56 | -2.82 | 3.53 | 1.41 | -0.375 | 10.5 | 5.631 | 63 | -- | -- |
| 321.63 | 0.835 | 11.6 | 1.58 | 0.577 | -2.82 | 2.09 | -- | -0.361 | 10.1 | 5.627 | 63 | -- | -- |
| 331.26 | 0.848 | 11.5 | 1.56 | 0.701 | -2.72 | -- | -1 | -0.332 | 10.1 | 5.908 | 63 | -- | -- |
| 338.53 | 0.857 | 11.6 | 1.74 | 0.609 | -2.83 | -- | -- | -0.357 | 9.58 | 5.444 | 73 | -- | -- |
| 339.25 | 0.858 | 11.6 | 1.75 | -- | -3.02 | -- | -1.13 | -0.39 | -- | 6.638 | 49 | -- | -- |
| 452.79 | 0.998 | 11.5 | 1.62 | 3.75 | -- | 1.84 | -- | -0.157 | 12 | -- | -- | -- | -- |
| 467.41 | 1.01 | 11.5 | 1.69 | 3.74 | -- | -- | -- | -0.148 | 12 | -- | -- | -- | -- |
| 345.2 | 0.865 | 11.6 | 1.68 | -- | -3.16 | -- | -- | -0.39 | -- | 5.59 | 57 | -- | -- |
| 410.1 | 0.943 | 11.6 | -- | 0.623 | -2.92 | -- | -- | -0.512 | 8.17 | 4.44 | 95 | -- | -- |
| 1348.92 | 1.72 | 11.5 | 1.58 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 542.88 | 1.09 | 11.5 | -- | 3.72 | -- | -- | -- | -0.337 | 11.9 | -- | -- | -- | -- |
| 418.54 | 0.953 | 11.6 | -- | -- | -3.13 | -- | -- | -0.564 | -- | 4.889 | 57 | -- | -- |
| 1414.51 | 1.76 | 11.6 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 330.04 | radiation | 1.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 3 | 331.56 | radiation | 1.0 | 90 | < th | dose independent | sin | 3 | NA |
| 5 | 332.42 | radiation | 1.0 | 90 | > th | dose independent | sin | 2 | NA |
| 6 | 332.62 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 12 | 338.95 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 13 | 339.04 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 14 | 339.16 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 15 | 339.21 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 16 | 339.40 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 339.63 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 22 | 339.99 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 23 | 339.99 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 68 | 340.01 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 69 | 340.09 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 70 | 340.12 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 81 | 340.47 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 87 | 340.82 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 117 | 342.61 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 119 | 342.69 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 124 | 343.03 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 135 | 343.71 | radiation | 1.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 137 | 344.13 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 140 | 344.19 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 199 | 348.10 | radiation | 1.0 | 90 | < th | dose independent | rect. | 20 | 23 |
| 227 | 350.50 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 17 |
| 279 | 352.88 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 285 | 353.22 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 23 |
| 361 | 357.63 | radiation | 1.0 | 90 | > th | dose independent | rect. | 14 | 23 |
| 407 | 360.17 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 510 | 361.22 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 520 | 361.61 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 20 |
| 542 | 362.30 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 625 | 365.27 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 639 | 365.99 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 666 | 366.52 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 703 | 367.29 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 887 | 370.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 23 |
| 891 | 370.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 916 | 371.46 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 931 | 371.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 933 | 371.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 961 | 372.37 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 6 |