BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0690800 Os04g0690800|AK071638
         (254 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44575.1  | chr1:16871768-16873194 FORWARD LENGTH=266          239   8e-64

>AT1G44575.1 | chr1:16871768-16873194 FORWARD LENGTH=266
          Length = 265

 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 142/199 (71%), Gaps = 1/199 (0%)

Query: 57  KNKSIVEDXXXXXXXXXXXXKENELFVGRVAMLGFAASLLGEAVTGKGILAQLNLETGIP 116
           K KS VED            K NELFVGRVAM+GFAASLLGEA+TGKGILAQLNLETGIP
Sbjct: 67  KPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 126

Query: 117 IYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDA-TGLERAVIPPGKGFRAALGLSEGGPL 175
           IYEAEP           GAIGALGDRG+FVDD  TGLE+AVIPPGK  R+ALGL E GPL
Sbjct: 127 IYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTGLEKAVIPPGKNVRSALGLKEQGPL 186

Query: 176 FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGVPXXXXXXXXXXXXXXXX 235
           FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETG+P                
Sbjct: 187 FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFF 246

Query: 236 XXXXXXGTGKFVTDDNDDQ 254
                 G GKF+TDD ++ 
Sbjct: 247 FAAINPGNGKFITDDGEES 265



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,025,802
Number of extensions: 133495
Number of successful extensions: 275
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)