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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0689300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphatidylinositol-specific phospholipase C, X region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0104) R2 : 0.00335
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0271 (0.0219) R2dN8 : 0.00433 R2N8 : 0.00335
σ : 0.196
deviance : 17.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.51 0.191 2.99 0.17 0.0657 -0.112 0.0276 -0.585 -0.0438 6.58 80.55 6221 -- --
16.92 0.192 2.99 0.112 0.0584 -0.138 -0.0354 -- -0.0741 6.39 82.42 7324 -- --
16.51 0.189 2.99 0.171 0.0642 -0.113 -- -0.591 -0.0436 6.48 80.41 6163 -- --
16.93 0.192 2.99 0.111 0.0582 -0.137 -- -- -0.0736 6.38 82.41 7324 -- --
16.68 0.19 2.99 0.175 -- -0.106 -- -0.592 -0.0414 -- 79.42 5762 -- --
17.26 0.195 2.97 0.09 0.056 -- -0.0282 -- -0.0183 6.49 -- -- -- --
17.26 0.195 2.97 0.0896 0.0558 -- -- -- -0.0182 6.57 -- -- -- --
17.09 0.193 2.99 0.108 -- -0.14 -- -- -0.0707 -- 82 7063 -- --
17.23 0.193 2.98 -- 0.0649 -0.11 -- -- -0.0699 6.37 82 7333 -- --
17.42 0.195 2.97 0.091 -- -- -- -- -0.017 -- -- -- -- --
17.47 0.196 2.98 -- 0.057 -- -- -- -0.0282 6.48 -- -- -- --
17.41 0.194 2.99 -- -- -0.113 -- -- -0.0718 -- 82 7063 -- --
17.64 0.196 2.98 -- -- -- -- -- -0.0271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.50 humidity 80.0 90 < th dose dependent rect. 24 3
2 15.53 humidity 80.0 90 < th dose independent rect. 24 3
47 16.13 radiation 20.0 43200 < th dose dependent rect. 21 1
48 16.14 temperature 15.0 1440 > th dose independent rect. 21 1
49 16.14 radiation 20.0 4320 < th dose dependent rect. 21 1
58 16.15 wind 3.0 30 > th dose independent rect. 20 1
62 16.15 temperature 30.0 1440 < th dose independent rect. 21 1
66 16.15 humidity 50.0 1440 > th dose independent rect. 21 1
73 16.15 atmosphere 995.0 1440 > th dose independent rect. 21 1
74 16.15 radiation 1.0 1440 < th dose independent rect. 21 1
94 16.15 temperature 10.0 1440 > th dose independent rect. 22 23
98 16.16 temperature 25.0 30 > th dose independent rect. 20 1
99 16.16 humidity 80.0 30 > th dose independent rect. 20 1
100 16.16 atmosphere 1005.0 30 > th dose independent rect. 20 1
101 16.16 atmosphere 995.0 30 > th dose independent rect. 21 23
102 16.16 temperature 20.0 30 > th dose dependent rect. 20 1
104 16.16 atmosphere 1000.0 30 > th dose dependent rect. 20 1
110 16.17 wind 5.0 30 < th dose independent rect. 20 1
113 16.17 temperature 10.0 30 > th dose independent rect. 20 1
116 16.17 temperature 30.0 30 < th dose independent rect. 20 1
117 16.17 humidity 50.0 30 > th dose independent rect. 20 1
120 16.17 humidity 90.0 30 < th dose independent rect. 20 1
121 16.17 atmosphere 995.0 30 > th dose independent rect. 20 1
122 16.17 atmosphere 1010.0 30 < th dose independent rect. 20 1
124 16.17 radiation 1.0 30 < th dose independent rect. 20 1
129 16.17 precipitation 0.1 30 < th dose independent rect. 20 1
130 16.17 temperature 10.0 30 > th dose independent rect. 21 23
133 16.17 wind 1.0 30 > th dose dependent rect. 20 1
134 16.17 temperature 10.0 30 > th dose dependent rect. 20 1
136 16.17 humidity 50.0 30 > th dose dependent rect. 20 1
140 16.17 radiation 1.0 30 < th dose dependent rect. 20 1
146 16.17 precipitation 0.1 30 < th dose dependent rect. 20 1
148 16.18 wind 7.0 30 < th dose dependent rect. 20 1
150 16.19 wind 9.0 1440 < th dose independent rect. 21 1
154 16.19 wind 9.0 30 < th dose independent rect. 21 23
156 16.19 humidity 90.0 30 < th dose dependent rect. 20 1
162 16.20 temperature 30.0 30 < th dose dependent rect. 20 1
163 16.20 atmosphere 1015.0 30 < th dose dependent rect. 20 1
232 16.31 humidity 80.0 90 < th dose dependent rect. 24 8
238 16.34 humidity 90.0 10 < th dose dependent rect. 4 1
242 16.35 temperature 20.0 90 < th dose dependent rect. 24 1
246 16.36 humidity 80.0 90 < th dose independent rect. 24 9
267 16.40 humidity 80.0 10 < th dose independent rect. 1 9
272 16.41 precipitation 0.1 10 < th dose independent rect. 21 23
273 16.41 atmosphere 1005.0 30 > th dose dependent rect. 3 2
275 16.41 precipitation 0.1 10 < th dose dependent rect. 21 23
291 16.44 humidity 90.0 10 < th dose independent rect. 1 22
298 16.45 humidity 80.0 270 < th dose independent rect. 22 1
299 16.45 precipitation 0.1 1440 < th dose independent rect. 21 1
306 16.45 precipitation 0.1 1440 < th dose dependent rect. 21 1
317 16.47 humidity 80.0 1440 > th dose independent rect. 24 2
323 16.47 temperature 25.0 30 > th dose dependent rect. 20 3
324 16.47 humidity 80.0 14400 < th dose dependent rect. 5 4
338 16.48 temperature 30.0 10 < th dose dependent rect. 4 1
346 16.49 humidity 80.0 90 > th dose independent rect. 21 10
352 16.50 temperature 20.0 10 < th dose independent rect. 1 1
359 16.50 humidity 80.0 90 > th dose independent rect. 21 12
370 16.51 humidity 90.0 10 < th dose independent rect. 1 20
381 16.52 temperature 25.0 30 < th dose independent rect. 4 1
386 16.52 humidity 80.0 10 < th dose independent rect. 1 7
398 16.54 humidity 70.0 14400 > th dose independent rect. 8 1
421 16.55 humidity 70.0 1440 < th dose independent rect. 10 1
426 16.55 humidity 50.0 30 > th dose independent rect. 21 23
434 16.55 temperature 10.0 30 > th dose dependent rect. 21 23
449 16.57 temperature 25.0 30 > th dose independent rect. 4 1
461 16.57 wind 1.0 14400 < th dose dependent rect. 6 1
466 16.57 humidity 90.0 10 < th dose dependent rect. 20 14
469 16.57 radiation 1.0 90 < th dose dependent rect. 1 23
473 16.58 humidity 70.0 1440 > th dose independent rect. 10 1
491 16.58 humidity 80.0 4320 < th dose independent rect. 21 16
503 16.59 wind 5.0 10 < th dose independent rect. 4 1
507 16.59 wind 5.0 4320 > th dose independent rect. 20 5
510 16.59 humidity 80.0 4320 < th dose independent rect. 21 14
514 16.59 wind 7.0 10 < th dose dependent rect. 4 1
516 16.59 temperature 25.0 90 > th dose dependent rect. 4 1
523 16.59 humidity 80.0 14400 < th dose dependent rect. 21 13
524 16.59 humidity 50.0 4320 > th dose dependent rect. 23 14
527 16.60 wind 5.0 14400 < th dose independent rect. 11 1
528 16.60 temperature 10.0 10 > th dose independent rect. 4 1
531 16.60 humidity 50.0 10 > th dose independent rect. 4 1
536 16.60 humidity 70.0 14400 < th dose independent rect. 8 1
537 16.60 atmosphere 995.0 10 > th dose independent rect. 4 1
538 16.60 atmosphere 1010.0 10 < th dose independent rect. 4 1
540 16.60 radiation 1.0 10 < th dose independent rect. 4 1
545 16.60 wind 5.0 4320 < th dose independent rect. 20 4
551 16.60 humidity 80.0 30 > th dose independent rect. 23 11
555 16.60 humidity 80.0 4320 > th dose independent rect. 22 14
562 16.60 temperature 10.0 10 > th dose independent rect. 5 23
566 16.60 atmosphere 1005.0 30 > th dose dependent rect. 1 1
567 16.60 radiation 1.0 10 < th dose dependent rect. 4 1
584 16.60 humidity 90.0 4320 < th dose dependent rect. 23 14
589 16.61 precipitation 0.1 10 < th dose independent rect. 4 1
592 16.61 temperature 30.0 270 < th dose independent rect. 10 11
609 16.61 humidity 50.0 10 > th dose dependent rect. 4 1
612 16.61 atmosphere 995.0 10 > th dose dependent rect. 4 1
614 16.61 atmosphere 1015.0 10 < th dose dependent rect. 4 1
615 16.61 precipitation 0.1 10 < th dose dependent rect. 4 1
656 16.62 wind 1.0 30 > th dose dependent rect. 4 1
683 16.63 humidity 80.0 10 < th dose independent sin 9 NA
686 16.63 humidity 80.0 4320 < th dose independent sin 6 NA
687 16.63 wind 1.0 10 > th dose independent rect. 4 1
691 16.63 wind 5.0 14400 < th dose independent rect. 10 5
694 16.63 humidity 70.0 4320 > th dose independent rect. 8 7
736 16.63 humidity 50.0 4320 > th dose dependent sin 6 NA
737 16.63 humidity 90.0 4320 < th dose dependent sin 7 NA
767 16.64 humidity 70.0 4320 > th dose independent sin 4 NA
784 16.64 humidity 70.0 4320 < th dose independent rect. 8 7
788 16.64 wind 1.0 30 > th dose independent rect. 1 9
845 16.64 humidity 70.0 4320 > th dose dependent rect. 3 9
884 16.65 humidity 70.0 14400 < th dose independent rect. 6 3
888 16.65 wind 5.0 14400 > th dose independent rect. 10 5
890 16.65 humidity 70.0 4320 > th dose independent rect. 10 5
900 16.65 wind 5.0 14400 > th dose independent rect. 9 8
901 16.65 wind 5.0 14400 < th dose independent rect. 9 8
948 16.65 radiation 1.0 90 < th dose independent rect. 1 23
953 16.65 wind 5.0 4320 > th dose dependent rect. 21 3
958 16.65 humidity 70.0 4320 > th dose dependent rect. 5 7