BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0689300 Os04g0689300|AK100293
(468 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G36945.1 | chr4:17420098-17422047 REVERSE LENGTH=409 360 e-100
AT1G49740.1 | chr1:18407728-18409468 FORWARD LENGTH=360 352 3e-97
AT3G19310.1 | chr3:6694260-6696193 FORWARD LENGTH=414 343 1e-94
AT5G67130.1 | chr5:26791599-26793649 FORWARD LENGTH=427 318 3e-87
AT1G13680.1 | chr1:4690409-4692702 FORWARD LENGTH=347 271 6e-73
>AT4G36945.1 | chr4:17420098-17422047 REVERSE LENGTH=409
Length = 408
Score = 360 bits (924), Expect = e-100, Method: Compositional matrix adjust.
Identities = 162/320 (50%), Positives = 227/320 (70%), Gaps = 2/320 (0%)
Query: 46 MRCATCSPLPGMGPPVCSRTTPLDPKAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPII 105
+ C +C P G C+R PL+P + L FN+Y+WLTTHNS+AI G+ S TG+ ++
Sbjct: 39 LSCQSC-PANGNTGSTCTRIQPLNPTSKVNGLPFNKYSWLTTHNSYAITGANSATGSFLV 97
Query: 106 APPNQEDTVTAQLKNGVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAF 165
+P NQED++T QLKNGVRG+MLD YDFQN++WLCHS GG C+NF A+Q A++ LKEI F
Sbjct: 98 SPKNQEDSITNQLKNGVRGIMLDTYDFQNDIWLCHSTGGTCFNFTAFQPAINALKEINDF 157
Query: 166 LDANPSEVITVFVEDYAGPXXXXXXXXXXX-XXXYLFPPAKMPKGGGDWPLLKDMIAQNH 224
L++N SE++T+ +EDY +L P ++MPK G DWP + DM+ QN
Sbjct: 158 LESNLSEIVTIILEDYVKSQMGLTNVFNASGLSKFLLPISRMPKDGTDWPTVDDMVKQNQ 217
Query: 225 RLLMFTSKRGKDGSDGLAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNF 284
RL++FTSK+ K+ S+GLAY+W+Y++E QYGNDG+ GSC R+ES ++D+ +SL+ N+
Sbjct: 218 RLVVFTSKKDKEASEGLAYQWNYMVENQYGNDGMKDGSCSSRSESSSLDTMSRSLVFQNY 277
Query: 285 FSTNPSQSWACGNNSAPLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGR 344
F T+P+ + AC +NS+PL+ ++ C++A+ KRWPNFIAVD+Y RS GGA A D ANGR
Sbjct: 278 FETSPNSTQACADNSSPLIEMMRTCHEAAGKRWPNFIAVDFYQRSDSGGAAEAVDEANGR 337
Query: 345 QQCGCDSIAYCKPGSAFGSC 364
CGCDS+ YCK + FG+C
Sbjct: 338 LTCGCDSLVYCKSNAPFGTC 357
>AT1G49740.1 | chr1:18407728-18409468 FORWARD LENGTH=360
Length = 359
Score = 352 bits (902), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 160/312 (51%), Positives = 208/312 (66%), Gaps = 2/312 (0%)
Query: 46 MRCATCSPLPGMGPPVCSRTTPLDPKAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPII 105
+ C TC P CSRT P++P L FN+Y+WLTTHNSFA +G SRTG+ I+
Sbjct: 43 LHCETCIANTDFRPR-CSRTQPINPITKAKGLPFNKYSWLTTHNSFARLGEVSRTGSAIL 101
Query: 106 APPNQEDTVTAQLKNGVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAF 165
AP NQ+D++T+QL NGVRG MLD YDFQN++WLCHSF G C+NF A+Q A+++L+E F
Sbjct: 102 APTNQQDSITSQLNNGVRGFMLDMYDFQNDIWLCHSFDGTCFNFTAFQPAINILREFQVF 161
Query: 166 LDANPSEVITVFVEDYA-GPXXXXXXXXXXXXXXYLFPPAKMPKGGGDWPLLKDMIAQNH 224
L+ N EV+T+ +EDY P ++FP ++MPK GGDWP L DM+ +N
Sbjct: 162 LEKNKEEVVTIIIEDYVKSPKGLTKVFDAAGLRKFMFPVSRMPKNGGDWPRLDDMVRKNQ 221
Query: 225 RLLMFTSKRGKDGSDGLAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNF 284
RLL+FTS K+ ++G+AY+W Y++E QYGN GL G CP RA+S M +SL+L+N
Sbjct: 222 RLLVFTSDSHKEATEGIAYQWKYMVENQYGNGGLKVGVCPNRAQSAPMSDKSKSLVLVNH 281
Query: 285 FSTNPSQSWACGNNSAPLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGR 344
F AC NSA L+ +K CY A+ +RWPNFIAVD+Y RS GGGAP A DVANG
Sbjct: 282 FPDAADVIVACKQNSASLLESIKTCYQAAGQRWPNFIAVDFYKRSDGGGAPQAVDVANGN 341
Query: 345 QQCGCDSIAYCK 356
CGCD+ A CK
Sbjct: 342 LICGCDNFAACK 353
>AT3G19310.1 | chr3:6694260-6696193 FORWARD LENGTH=414
Length = 413
Score = 343 bits (879), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 207/307 (67%), Gaps = 1/307 (0%)
Query: 60 PVCSRTTPLDPKAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPIIAPPNQEDTVTAQLK 119
P CSR P++P L +N+Y+WLTTHNSFA +G+ S TG+ I+AP NQ+D++T+QL
Sbjct: 56 PRCSRMQPINPTTKVKGLPYNKYSWLTTHNSFARMGAKSGTGSMILAPSNQQDSITSQLL 115
Query: 120 NGVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAFLDANPSEVITVFVE 179
NGVRG MLD YDFQN++WLCHS+GG C+N+ A+Q A+++LKE FLD N V+T+ +E
Sbjct: 116 NGVRGFMLDLYDFQNDIWLCHSYGGNCFNYTAFQPAVNILKEFQVFLDKNKDVVVTLILE 175
Query: 180 DYA-GPXXXXXXXXXXXXXXYLFPPAKMPKGGGDWPLLKDMIAQNHRLLMFTSKRGKDGS 238
DY P ++FP ++MPK G DWP L DMI QN RLL+FTS K+ S
Sbjct: 176 DYVKSPNGLTRVFDASGLRNFMFPVSRMPKNGEDWPTLDDMICQNQRLLVFTSNPQKEAS 235
Query: 239 DGLAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNFFSTNPSQSWACGNN 298
+G+A+ W Y++E QYG+ G+ G C R ES+AM +SLIL+N+F +C N
Sbjct: 236 EGIAFMWRYMIENQYGDGGMKAGVCTNRPESVAMGDRSRSLILVNYFPDTADVIGSCKQN 295
Query: 299 SAPLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGRQQCGCDSIAYCKPG 358
SAPL+ +K C +AS KRWPNFIAVD+Y RS GGGAP A DVANG CGC+ IA CK
Sbjct: 296 SAPLLDTVKNCQEASGKRWPNFIAVDFYKRSDGGGAPKAVDVANGHAVCGCEDIAACKEN 355
Query: 359 SAFGSCS 365
+G+C
Sbjct: 356 MPYGTCE 362
>AT5G67130.1 | chr5:26791599-26793649 FORWARD LENGTH=427
Length = 426
Score = 318 bits (816), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 203/320 (63%), Gaps = 2/320 (0%)
Query: 46 MRCATCSPLPGMGPPVCSRTTPLDPKAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPII 105
+ C C P G PVC+R P + L FN+YTWL THN+F+ +P G I
Sbjct: 50 LYCGDC-PAVGRSKPVCTRGQATSPTSIINGLPFNKYTWLMTHNAFSNANAPLLPGVERI 108
Query: 106 APPNQEDTVTAQLKNGVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAF 165
NQEDT+T QL+NGVRGLMLD YDF N++WLCHS G+C+NF A+Q A+++L+E+ AF
Sbjct: 109 TFYNQEDTITNQLQNGVRGLMLDMYDFNNDIWLCHSLRGQCFNFTAFQPAINILREVEAF 168
Query: 166 LDANPSEVITVFVEDYAG-PXXXXXXXXXXXXXXYLFPPAKMPKGGGDWPLLKDMIAQNH 224
L NP+E++T+ +EDY P Y FP +KMP+ G DWP + DM+ +NH
Sbjct: 169 LSQNPTEIVTIIIEDYVHRPKGLSTLFANAGLDKYWFPVSKMPRKGEDWPTVTDMVQENH 228
Query: 225 RLLMFTSKRGKDGSDGLAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNF 284
RLL+FTS K+ +G+AY+W Y++E + G+ G+ GSCP R ES ++S SL LMN+
Sbjct: 229 RLLVFTSVAAKEDEEGVAYQWRYMVENESGDPGVKRGSCPNRKESQPLNSKSSSLFLMNY 288
Query: 285 FSTNPSQSWACGNNSAPLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGR 344
F T P + AC +SAPL + C + R PNF+AV++YMRS GGG D NG
Sbjct: 289 FPTYPVEKDACKEHSAPLAEMVGTCLKSGGNRMPNFLAVNFYMRSDGGGVFEILDRMNGP 348
Query: 345 QQCGCDSIAYCKPGSAFGSC 364
CGC++++ C+PG+A+GSC
Sbjct: 349 VLCGCETLSACQPGAAYGSC 368
>AT1G13680.1 | chr1:4690409-4692702 FORWARD LENGTH=347
Length = 346
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 128/302 (42%), Positives = 176/302 (58%), Gaps = 9/302 (2%)
Query: 56 GMGPPVCSRTTPLDP-KAHGTDLAFNRYTWLTTHNSFAIVGSPSRTGTPIIAPPNQEDTV 114
G+ C R+ D + FN+Y +LTTHNS+AI G T QEDT+
Sbjct: 52 GIDVARCVRSNITDQFSIVNNSMPFNKYAFLTTHNSYAIEGKALHVAT-------QEDTI 104
Query: 115 TAQLKNGVRGLMLDAYDFQNEVWLCHSFGGKCYNFAAYQRAMDVLKEIGAFLDANPSEVI 174
QL +GVR LMLD YD++ +VW CHSF +C+ F + RA+D KEI AFL ANPSE++
Sbjct: 105 VQQLNSGVRALMLDTYDYEGDVWFCHSFDEQCFEFTKFNRAIDTFKEIFAFLTANPSEIV 164
Query: 175 TVFVEDYAGPXXXXXXXXXXX-XXXYLFPPAKMPKGGGDWPLLKDMIAQNHRLLMFTSKR 233
T+ +EDY + FP MP GG DWPL+KDM+A NHRL++FTS +
Sbjct: 165 TLILEDYVKSQNGLTKVFTDSGLKKFWFPVQNMPIGGQDWPLVKDMVANNHRLIVFTSAK 224
Query: 234 GKDGSDGLAYEWDYVLETQYGNDGLVGGSCPKRAESMAMDSTKQSLILMNFFSTNPSQSW 293
K ++G+AY+W+Y++E QYG+DG+ C RA+S + ++L+ +N F T P +
Sbjct: 225 SKQETEGIAYQWNYMVENQYGDDGVKPDECSNRADSALLTDKTKALVSVNHFKTVPVKIL 284
Query: 294 ACGNNSAPLVAKLKACYDASAKRWPNFIAVDYYMRSKGGGAPLATDVANGRQQCGCDSIA 353
C NS L+ +K CY A+ RW NF+AV++Y RS GGG A D NG CG D +
Sbjct: 285 TCEENSEQLLDMIKTCYVAAGNRWANFVAVNFYKRSNGGGTFQAIDKLNGELLCGRDDVH 344
Query: 354 YC 355
C
Sbjct: 345 AC 346
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,233,730
Number of extensions: 321368
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 5
Length of query: 468
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 366
Effective length of database: 8,310,137
Effective search space: 3041510142
Effective search space used: 3041510142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)