Os04g0687300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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Os04g0687300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heat shock protein DnaJ, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.3 | 0.232 | 9.07 | -1.28 | 0.607 | -0.546 | -0.0415 | 2.23 | -0.383 | 18.7 | 26.97 | 5879 | -- | -- |
| 24.78 | 0.232 | 9.12 | -1.44 | 0.596 | -0.67 | -0.0735 | -- | -0.371 | 18.8 | 21.5 | 21701 | -- | -- |
| 24.3 | 0.23 | 9.07 | -1.27 | 0.607 | -0.547 | -- | 2.25 | -0.379 | 18.7 | 27 | 5871 | -- | -- |
| 24.77 | 0.232 | 9.12 | -1.45 | 0.595 | -0.67 | -- | -- | -0.377 | 18.8 | 21.4 | 21711 | -- | -- |
| 43.15 | 0.306 | 9.06 | -1.24 | -- | -0.558 | -- | 2.33 | -0.377 | -- | 27.4 | 5753 | -- | -- |
| 32.35 | 0.267 | 9.18 | -2.1 | 0.599 | -- | -0.0403 | -- | -0.648 | 18.7 | -- | -- | -- | -- |
| 32.35 | 0.266 | 9.18 | -2.1 | 0.599 | -- | -- | -- | -0.648 | 18.7 | -- | -- | -- | -- |
| 43.47 | 0.307 | 9.1 | -1.42 | -- | -0.7 | -- | -- | -0.372 | -- | 20.7 | 21581 | -- | -- |
| 33.31 | 0.269 | 9.03 | -- | 0.599 | -1.69 | -- | -- | -0.00345 | 18.9 | 18.5 | 47520 | -- | -- |
| 51.1 | 0.334 | 9.17 | -2.11 | -- | -- | -- | -- | -0.66 | -- | -- | -- | -- | -- |
| 148.64 | 0.57 | 9.13 | -- | 0.626 | -- | -- | -- | -0.414 | 18.5 | -- | -- | -- | -- |
| 52.09 | 0.336 | 9.02 | -- | -- | -1.7 | -- | -- | -0.011 | -- | 18.57 | 47520 | -- | -- |
| 169.02 | 0.607 | 9.11 | -- | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.32 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 26 | 23.44 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 28 | 23.46 | radiation | 10 | 43200 | < th | dose independent | sin | 11 | NA |
| 58 | 23.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 60 | 23.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 68 | 23.61 | radiation | 10 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 73 | 23.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 78 | 23.65 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 12 |
| 80 | 23.66 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 102 | 23.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 104 | 23.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 106 | 23.71 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 107 | 23.71 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 127 | 23.73 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 133 | 23.74 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 158 | 23.77 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 184 | 23.78 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 197 | 23.78 | radiation | 30 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 241 | 23.79 | radiation | 30 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 325 | 23.86 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 337 | 23.88 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 481 | 23.94 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 486 | 23.94 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 838 | 24.02 | radiation | 20 | 43200 | > th | dose dependent | rect. | 15 | 18 |