BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0687300 Os04g0687300|AK060617
         (274 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18465.1  | chr2:8003223-8004742 REVERSE LENGTH=269             92   4e-19
AT3G58020.1  | chr3:21479501-21480981 FORWARD LENGTH=255           79   2e-15
AT2G42080.1  | chr2:17553409-17555475 REVERSE LENGTH=264           76   2e-14

>AT2G18465.1 | chr2:8003223-8004742 REVERSE LENGTH=269
          Length = 268

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 48/61 (78%)

Query: 211 AHRAILGLPACGPLTLDAVKTAFRASALRWHPDKHPGSSQAVAEEKFKLCVNAYNSICNV 270
           + R +LGLP  GP+ +D VK AFR+SAL+WHPDKH G SQ  A+EKFKLCV+AY S+C+ 
Sbjct: 207 SERIVLGLPLDGPIKVDDVKNAFRSSALKWHPDKHQGPSQVAAQEKFKLCVDAYKSLCSA 266

Query: 271 L 271
           L
Sbjct: 267 L 267



>AT3G58020.1 | chr3:21479501-21480981 FORWARD LENGTH=255
          Length = 254

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 44/61 (72%)

Query: 211 AHRAILGLPACGPLTLDAVKTAFRASALRWHPDKHPGSSQAVAEEKFKLCVNAYNSICNV 270
           +HR  LGL + GPL L+ VK A+RA AL+WHPD+H  S++  AEEKFKLC  AY S+C  
Sbjct: 191 SHRQTLGLSSSGPLNLEDVKIAYRACALKWHPDRHHTSTKNEAEEKFKLCTVAYQSLCEK 250

Query: 271 L 271
           L
Sbjct: 251 L 251



>AT2G42080.1 | chr2:17553409-17555475 REVERSE LENGTH=264
          Length = 263

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 41/61 (67%)

Query: 211 AHRAILGLPACGPLTLDAVKTAFRASALRWHPDKHPGSSQAVAEEKFKLCVNAYNSICNV 270
           +HR  LGL   GPL L  VK A+R  AL+WHPD+H GS++  AE KFKLC  AY S+C  
Sbjct: 200 SHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQGSTKEAAEAKFKLCSVAYQSLCEK 259

Query: 271 L 271
           L
Sbjct: 260 L 260



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,626,225
Number of extensions: 212567
Number of successful extensions: 564
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 3
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)