Os04g0686300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0686300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF167 family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	10.5	(0.0196)	R²	:	0.453
β₁	:	0.853	(0.0718)	R²_dD	:	0.176	R²_D	:	0.102
β₂	:	0.638	(0.0484)	R²_dC	:	0.209	R²_C	:	0.195
β₃	:	--	(--)	R²_dE	:	--	R²_E	:	--
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.383	(0.0418)	R²_dN8	:	0.135	R²_N8	:	0.0599
σ	:	0.369
deviance	:	61.93
__

_____

C
peak time of C	:	2.77
E
wheather	:	--
threshold	:	--
memory length	:	--
response mode	:	--
dose dependency	:	--
G
type of G	:	--
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
50.46	0.334	10.6	0.422	0.597	-1.15	0.055	-0.651	0.213	2.81	18.3	3842	--	--
50.8	0.332	10.6	0.375	0.599	-0.969	0.0871	--	0.202	2.81	18.34	3827	--	--
50.47	0.331	10.6	0.422	0.597	-1.15	--	-0.659	0.213	2.82	18.32	3841	--	--
50.79	0.332	10.6	0.387	0.608	-0.983	--	--	0.205	2.86	18.32	3644	--	--
70.89	0.392	10.5	0.419	--	-1.3	--	-0.878	0.218	--	18.3	3884	--	--
61.93	0.369	10.5	0.853	0.638	--	-0.000262	--	0.383	2.78	--	--	--	--
61.93	0.369	10.5	0.853	0.638	--	--	--	0.383	2.77	--	--	--	--
70.45	0.391	10.6	0.394	--	-1.05	--	--	0.216	--	18.3	2534	--	--
52.74	0.338	10.6	--	0.629	-1.1	--	--	0.118	2.73	18.3	10294	--	--
85.53	0.432	10.5	0.88	--	--	--	--	0.399	--	--	--	--	--
81.1	0.421	10.6	--	0.654	--	--	--	0.288	2.79	--	--	--	--
73.83	0.4	10.6	--	--	-1.19	--	--	0.114	--	18.3	3945	--	--
105.96	0.48	10.6	--	--	--	--	--	0.301	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	47.98	temperature	20	14400	< th	dose independent	rect.	21	1
2	48.12	radiation	30	43200	< th	dose independent	rect.	10	3
4	48.14	temperature	20	14400	> th	dose independent	rect.	21	1
14	48.22	wind	1	14400	> th	dose independent	rect.	23	3
16	48.22	radiation	30	43200	< th	dose independent	rect.	6	7
63	48.27	radiation	30	43200	> th	dose dependent	rect.	11	1
69	48.30	radiation	40	43200	> th	dose independent	rect.	11	1
71	48.32	wind	1	14400	< th	dose independent	rect.	22	4
74	48.34	radiation	30	43200	< th	dose independent	sin	7	NA
101	48.41	wind	9	43200	> th	dose independent	rect.	9	8
106	48.43	radiation	20	43200	> th	dose dependent	rect.	10	3
129	48.50	wind	9	43200	> th	dose independent	rect.	10	4
137	48.53	radiation	40	43200	> th	dose independent	rect.	10	4
153	48.54	wind	9	43200	< th	dose independent	rect.	9	8
228	48.60	radiation	30	43200	< th	dose independent	no	NA	NA
284	48.60	radiation	30	43200	< th	dose independent	rect.	9	23
294	48.61	radiation	10	43200	< th	dose independent	rect.	12	1
613	48.73	radiation	20	43200	> th	dose dependent	sin	7	NA
641	48.75	radiation	10	43200	< th	dose independent	rect.	5	3
694	48.76	radiation	40	43200	> th	dose dependent	sin	7	NA
839	48.79	radiation	10	43200	< th	dose independent	rect.	17	15
952	48.80	wind	9	43200	> th	dose independent	sin	22	NA
954	48.80	radiation	40	43200	> th	dose independent	rect.	13	1