BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0686300 Os04g0686300|AK070132
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49170.1  | chr1:18183561-18184434 REVERSE LENGTH=127          146   2e-36
AT5G63440.2  | chr5:25406360-25408195 FORWARD LENGTH=233           54   2e-08

>AT1G49170.1 | chr1:18183561-18184434 REVERSE LENGTH=127
          Length = 126

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 86/95 (90%)

Query: 31  CLRLMPPSTVAISIQAKPGSKLATITEIGDEAVGVQIDAPARDGEANAALVDFISSVLGV 90
           CLRL+ PS+VAI+I AKPGSK A+IT++ DEAVGVQIDAPARDGEANAAL++++SSVLGV
Sbjct: 28  CLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDGEANAALLEYMSSVLGV 87

Query: 91  KKREVSIGSGSKSREKVVLVQDATLQGVFDALKKA 125
           K+R+VS+GSGSKSR+KVV+V+D T Q VF AL +A
Sbjct: 88  KRRQVSLGSGSKSRDKVVIVEDMTQQSVFQALSQA 122



>AT5G63440.2 | chr5:25406360-25408195 FORWARD LENGTH=233
          Length = 232

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 58/95 (61%)

Query: 31  CLRLMPPSTVAISIQAKPGSKLATITEIGDEAVGVQIDAPARDGEANAALVDFISSVLGV 90
           C+  +    V ++I+ +  ++ + IT +  + V V + APA  GEAN  L++F+  VLG+
Sbjct: 135 CISQLDGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNELLEFMGRVLGL 194

Query: 91  KKREVSIGSGSKSREKVVLVQDATLQGVFDALKKA 125
           +  ++++  G  S+ K+++V+D + + V++ L +A
Sbjct: 195 RLSQMTLQRGWNSKSKLLVVEDLSARQVYEKLLEA 229



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,789,440
Number of extensions: 57438
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)