Os04g0686000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os04g0686000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 508.29 | 1.06 | 3.9 | 1.69 | 1.03 | 4.54 | 1.28 | 5.78 | 0.238 | 0.548 | 0.9926 | 1434 | -- | -- |
| 516.78 | 1.06 | 3.8 | 2.19 | 1.08 | 3.34 | 1.38 | -- | 0.37 | 0.517 | 2.229 | 1425 | -- | -- |
| 514.77 | 1.06 | 3.91 | 1.61 | 0.939 | 4.58 | -- | 6.03 | 0.234 | 0.72 | 1 | 1441 | -- | -- |
| 522.93 | 1.07 | 3.81 | 2.15 | 1.07 | 3.28 | -- | -- | 0.364 | 0.608 | 2.249 | 1425 | -- | -- |
| 517.38 | 1.06 | 3.87 | 1.6 | -- | 4.84 | -- | 5.95 | 0.25 | -- | 1.28 | 1522 | -- | -- |
| 656.75 | 1.2 | 3.92 | 1.47 | 0.939 | -- | 0.83 | -- | -0.118 | 0.451 | -- | -- | -- | -- |
| 659.67 | 1.2 | 3.92 | 1.44 | 0.937 | -- | -- | -- | -0.123 | 0.573 | -- | -- | -- | -- |
| 529.71 | 1.07 | 3.8 | 2.07 | -- | 3.85 | -- | -- | 0.357 | -- | 2.228 | 1558 | -- | -- |
| 628.63 | 1.17 | 3.88 | -- | 1.23 | 2.42 | -- | -- | 0.0581 | 0.475 | 2.969 | 1404 | -- | -- |
| 714.75 | 1.25 | 3.9 | 1.47 | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
| 714.37 | 1.25 | 3.95 | -- | 0.959 | -- | -- | -- | -0.283 | 0.647 | -- | -- | -- | -- |
| 632.03 | 1.17 | 3.87 | -- | -- | 3.01 | -- | -- | 0.0398 | -- | 2.92 | 1604 | -- | -- |
| 772.02 | 1.3 | 3.94 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 497.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 4 | 497.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 7 | 499.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 10 | 499.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 18 | 501.06 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 25 | 502.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 27 | 502.73 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 32 | 503.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 39 | 504.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 42 | 504.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 43 | 504.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 45 | 504.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 57 | 504.99 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 65 | 505.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 66 | 505.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 143 | 506.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 151 | 507.66 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 10 |
| 158 | 508.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 161 | 508.13 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 162 | 508.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 163 | 508.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 176 | 508.33 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 194 | 508.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 200 | 508.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 201 | 508.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 209 | 508.76 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 248 | 508.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 272 | 509.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 274 | 509.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 275 | 509.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 285 | 509.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 288 | 509.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 294 | 509.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 297 | 509.90 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 299 | 509.91 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 305 | 509.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 352 | 510.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 377 | 510.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 426 | 512.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 447 | 512.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 457 | 512.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 508 | 512.49 | humidity | 70 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 572 | 513.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 573 | 513.61 | humidity | 80 | 1440 | > th | dose independent | sin | 19 | NA |
| 585 | 513.85 | humidity | 80 | 1440 | < th | dose independent | sin | 19 | NA |
| 592 | 513.93 | humidity | 70 | 1440 | > th | dose dependent | sin | 18 | NA |
| 629 | 514.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 716 | 515.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 7 |
| 724 | 515.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 728 | 515.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 782 | 516.63 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 821 | 517.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 7 |
| 835 | 517.24 | temperature | 25 | 4320 | > th | dose independent | sin | 1 | NA |
| 913 | 517.76 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 925 | 517.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 930 | 517.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 953 | 517.96 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 970 | 518.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 979 | 518.05 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |