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Os04g0683100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pre-mRNA cleavage factor I 25 kDa subunit (Cleavage and polyadenylation specific factor 5, 25 kD subunit).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0168) R2 : 0.595
β1 : 1.57 (0.0615) R2dD : 0.599 R2D : 0.492
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.333 (0.0359) R2dN8 : 0.103 R2N8 : -0.00358
σ : 0.315
deviance : 45.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.42 0.263 11 1.04 0.419 -0.119 0.21 -2.25 0.188 19.6 15.1 6797 -- --
35.84 0.279 10.9 1.51 0.418 0.102 0.211 -- 0.299 19.6 12.29 15177 -- --
31.53 0.262 11 1.03 0.416 -0.118 -- -2.24 0.187 19.6 15.1 6921 -- --
35.91 0.279 10.9 1.5 0.419 0.107 -- -- 0.295 19.4 9.808 15232 -- --
40.91 0.298 11 1.04 -- -0.12 -- -2.19 0.183 -- 15.28 7046 -- --
35.99 0.281 10.9 1.58 0.42 -- 0.189 -- 0.339 19.5 -- -- -- --
36.09 0.281 10.9 1.57 0.421 -- -- -- 0.34 19.5 -- -- -- --
45.3 0.313 10.9 1.47 -- 0.117 -- -- 0.278 -- 9.42 13730 -- --
50.9 0.332 11 -- 0.416 1.14 -- -- -0.177 19.3 -0.2785 47520 -- --
45.54 0.315 10.9 1.57 -- -- -- -- 0.333 -- -- -- -- --
101.46 0.471 10.9 -- 0.408 -- -- -- 0.164 19.7 -- -- -- --
60.1 0.361 11 -- -- 1.14 -- -- -0.182 -- -20.27 47520 -- --
110.43 0.49 10.9 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.75 wind 1 4320 > th dose independent rect. 4 2
2 28.90 wind 1 4320 < th dose independent rect. 4 2
9 29.58 wind 7 43200 > th dose dependent rect. 17 15
11 29.60 wind 9 43200 < th dose independent rect. 16 17
12 29.61 wind 9 43200 > th dose independent rect. 16 16
20 29.66 wind 7 43200 > th dose dependent rect. 18 10
21 29.67 radiation 1 1440 < th dose independent rect. 11 1
24 29.67 radiation 1 1440 < th dose dependent rect. 11 1
34 29.72 wind 9 43200 > th dose independent rect. 18 11
47 29.74 wind 7 43200 > th dose dependent sin 12 NA
48 29.75 wind 7 43200 > th dose independent rect. 18 9
67 29.80 wind 7 43200 > th dose independent sin 12 NA
69 29.80 wind 7 43200 < th dose independent rect. 18 10
78 29.82 wind 9 43200 < th dose independent rect. 16 9
84 29.83 wind 9 43200 < th dose independent sin 12 NA
95 29.85 wind 3 4320 < th dose independent rect. 8 1
149 29.96 wind 3 4320 > th dose independent rect. 8 1
174 30.01 wind 7 43200 > th dose independent rect. 19 1
188 30.04 wind 5 43200 < th dose dependent rect. 9 1
194 30.06 wind 5 43200 < th dose independent rect. 9 1
202 30.08 wind 5 43200 > th dose independent rect. 9 1
203 30.08 radiation 20 1440 < th dose independent rect. 11 2
216 30.10 wind 5 43200 > th dose independent rect. 17 22
242 30.14 wind 5 43200 < th dose independent rect. 17 22
245 30.14 wind 5 43200 > th dose dependent rect. 17 22
251 30.15 wind 7 43200 > th dose dependent rect. 19 1
261 30.16 wind 1 4320 < th dose dependent rect. 4 2
283 30.19 wind 5 14400 < th dose independent rect. 6 6
291 30.20 wind 5 14400 > th dose independent rect. 6 6
333 30.24 wind 5 43200 > th dose independent rect. 20 22
334 30.24 wind 5 4320 < th dose dependent rect. 8 1
356 30.26 radiation 20 1440 < th dose dependent rect. 11 2
363 30.27 wind 5 43200 < th dose independent rect. 20 22
370 30.28 wind 5 43200 > th dose independent sin 2 NA
383 30.29 wind 5 14400 > th dose independent rect. 19 19
402 30.31 wind 5 43200 < th dose independent sin 2 NA
409 30.31 wind 5 43200 > th dose independent rect. 24 18
414 30.31 wind 5 43200 > th dose independent rect. 13 23
428 30.32 wind 7 43200 < th dose independent rect. 19 1
443 30.33 wind 5 43200 > th dose independent rect. 6 10
455 30.34 wind 5 43200 > th dose independent no NA NA
461 30.34 wind 5 43200 < th dose independent rect. 23 19
465 30.34 wind 5 43200 > th dose independent rect. 23 23
474 30.35 wind 9 43200 < th dose independent rect. 17 3
487 30.35 wind 5 14400 < th dose independent rect. 19 19
493 30.35 wind 5 43200 > th dose dependent no NA NA
494 30.35 wind 1 43200 > th dose dependent rect. 9 1
502 30.36 wind 5 43200 < th dose independent rect. 5 11
519 30.36 wind 5 43200 > th dose dependent rect. 23 23
540 30.37 wind 5 43200 > th dose dependent rect. 2 23
541 30.37 wind 5 43200 > th dose dependent rect. 6 23
557 30.38 wind 5 43200 > th dose independent rect. 2 23
558 30.38 wind 5 43200 > th dose independent rect. 4 23
559 30.38 wind 5 43200 > th dose independent rect. 6 23
571 30.39 wind 1 14400 > th dose independent rect. 23 3
595 30.40 wind 5 43200 < th dose independent no NA NA
609 30.40 wind 5 43200 < th dose independent rect. 23 23
617 30.41 wind 7 14400 < th dose independent rect. 21 1
624 30.41 wind 1 43200 > th dose independent rect. 13 14
638 30.41 wind 5 43200 > th dose independent rect. 10 23
652 30.42 wind 7 14400 > th dose independent rect. 21 1
692 30.43 radiation 10 4320 > th dose dependent rect. 17 14
733 30.45 wind 5 43200 < th dose independent rect. 2 23
734 30.45 wind 5 43200 < th dose independent rect. 4 23
735 30.45 wind 5 43200 < th dose independent rect. 6 23
740 30.45 wind 5 14400 > th dose dependent rect. 8 1
816 30.48 wind 1 14400 < th dose independent rect. 23 1
829 30.48 wind 5 43200 > th dose dependent sin 2 NA
838 30.49 wind 1 14400 < th dose independent rect. 22 4
846 30.49 wind 5 43200 < th dose independent rect. 10 23
858 30.50 wind 1 43200 > th dose independent rect. 15 12
876 30.50 wind 5 43200 > th dose dependent rect. 4 12
881 30.51 radiation 10 4320 > th dose independent rect. 6 1
969 30.53 temperature 15 4320 > th dose dependent rect. 18 1