BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0683100 Os04g0683100|AK064962
         (202 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25550.1  | chr4:13048519-13050873 FORWARD LENGTH=201          361   e-100
AT4G29820.1  | chr4:14596047-14597317 REVERSE LENGTH=223          234   2e-62

>AT4G25550.1 | chr4:13048519-13050873 FORWARD LENGTH=201
          Length = 200

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/191 (86%), Positives = 179/191 (93%)

Query: 12  YPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQI 71
           YPL+NY+FGTKEPK+EKDTSVADR ARMK+NYMKEGMRTSVE ILLVQEHNHPHILLLQI
Sbjct: 10  YPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILLLQI 69

Query: 72  GNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMY 131
           GNTFCKLPGGRLKPGENE +GLKRKL SKL  NS +  P+W VGECVA WWRPNFET+MY
Sbjct: 70  GNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFETMMY 129

Query: 132 PYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTIPQQ 191
           PYCPPHITKPKECK+L+IVHLSE+EYFAVP+NLKLLAVPLFELYDNVQRYGPVISTIPQQ
Sbjct: 130 PYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQ 189

Query: 192 LSRFQFNMVSS 202
           LSRF FNM+SS
Sbjct: 190 LSRFHFNMISS 200



>AT4G29820.1 | chr4:14596047-14597317 REVERSE LENGTH=223
          Length = 222

 Score =  234 bits (597), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 142/189 (75%)

Query: 12  YPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQI 71
           YPL++Y FG+KE    KD  ++DR  R+K NY   G+RT VEA+LLV+   HPH+LLLQ 
Sbjct: 32  YPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQY 91

Query: 72  GNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFETVMY 131
            N+  KLPGGRL+PGE++IEGLKRKL SKL+VN       ++VGEC+ +WWRPNFET+MY
Sbjct: 92  RNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFETLMY 151

Query: 132 PYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTIPQQ 191
           P+ PP+I  PKEC KLF+V L   + F VP+N KLLAVPL +L++N + YGP++S IP+ 
Sbjct: 152 PFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKL 211

Query: 192 LSRFQFNMV 200
           LS+F FNM+
Sbjct: 212 LSKFSFNMM 220



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,575,314
Number of extensions: 195001
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 108
Effective length of database: 8,529,465
Effective search space: 921182220
Effective search space used: 921182220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)