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Os04g0681600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF580 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.19 (0.0314) R2 : 0.597
β1 : -0.952 (0.116) R2dD : 0.0628 R2D : 0.0198
β2 : 1.45 (0.0756) R2dC : 0.328 R2C : 0.336
β3 : 2.3 (0.144) R2dE : 0.237 R2E : 0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0617 (0.0668) R2dN8 : 0.00105 R2N8 : 0.0013
σ : 0.586
deviance : 158.04
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C
peak time of C : 22.2
E
wheather : temperature
threshold : 4.268
memory length : 76
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.26
open length of G : 22.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.51 0.571 7.24 -1.26 1.47 2.24 0.763 -3.14 -0.0506 22.3 7.749 83 7.17 22.7
153.79 0.578 7.19 -0.95 1.51 2.41 1.1 -- 0.0767 22.3 6.532 47 7.5 22.8
149.52 0.57 7.24 -1.28 1.45 2.17 -- -3.46 -0.0473 22.2 6.97 86 7.17 22.6
158.04 0.586 7.19 -0.952 1.45 2.3 -- -- 0.0617 22.2 4.268 76 7.26 22.7
178.68 0.623 7.18 -0.987 -- 2.55 -- -0.839 -0.0686 -- 2.33 465 7.6 18.9
220.45 0.696 7.18 -0.587 1.69 -- 0.181 -- 0.12 20.5 -- -- -- --
220.55 0.695 7.18 -0.592 1.69 -- -- -- 0.12 20.5 -- -- -- --
178.3 0.622 7.17 -0.942 -- 2.41 -- -- -0.0407 -- 0.4188 480 7.29 19.1
179.38 0.624 7.15 -- 1.42 2.13 -- -- 0.222 21.8 2.046 61 7.45 22.5
380.62 0.912 7.14 -0.599 -- -- -- -- 0.104 -- -- -- -- --
229.79 0.709 7.17 -- 1.69 -- -- -- 0.186 20.5 -- -- -- --
198.07 0.655 7.17 -- -- 2.39 -- -- 0.0225 -- -3.583 438 8.03 18.2
390.09 0.922 7.12 -- -- -- -- -- 0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 150.73 temperature 10 90 > th dose dependent rect. 7 23
2 151.49 temperature 15 10 > th dose dependent rect. 8 22
5 152.71 humidity 90 270 < th dose independent rect. 7 10
16 156.04 radiation 20 4320 < th dose independent rect. 23 7
21 156.32 humidity 50 10 > th dose dependent rect. 6 9
25 156.62 humidity 80 1440 > th dose independent rect. 7 5
31 157.24 humidity 50 270 > th dose dependent rect. 3 10
35 158.24 humidity 90 30 < th dose dependent rect. 8 11
44 159.16 radiation 1 270 > th dose independent rect. 7 11
58 160.19 humidity 80 270 > th dose independent rect. 3 10
61 160.24 humidity 50 10 > th dose dependent rect. 6 16
76 160.64 humidity 70 1440 > th dose dependent rect. 8 4
84 160.90 humidity 50 10 > th dose dependent rect. 6 14
86 160.99 humidity 80 1440 < th dose independent rect. 7 5
93 161.20 temperature 15 270 > th dose independent rect. 7 10
111 161.73 humidity 90 90 < th dose dependent sin 23 NA
112 161.75 radiation 20 4320 < th dose independent rect. 21 9
117 162.00 humidity 80 90 > th dose independent rect. 5 8
138 162.58 humidity 60 90 > th dose dependent rect. 5 23
144 162.78 temperature 15 10 > th dose dependent rect. 11 19
147 162.94 humidity 60 10 > th dose dependent rect. 6 18
167 163.38 humidity 90 270 < th dose dependent sin 2 NA
170 163.43 temperature 10 10 > th dose dependent rect. 22 8
171 163.46 humidity 80 90 < th dose independent sin 0 NA
174 163.49 radiation 1 270 > th dose independent sin 0 NA
176 163.56 humidity 70 1440 > th dose dependent rect. 9 2
192 163.87 temperature 15 1440 > th dose independent rect. 7 16
195 163.92 humidity 90 1440 < th dose dependent rect. 7 5
217 164.34 humidity 50 270 > th dose dependent sin 3 NA
236 164.65 humidity 90 90 < th dose dependent rect. 8 17
242 164.77 humidity 90 10 < th dose dependent rect. 9 16
249 164.83 humidity 90 90 < th dose dependent rect. 22 20
250 164.85 humidity 80 270 > th dose independent sin 4 NA
309 165.54 humidity 80 270 > th dose dependent rect. 3 20
341 165.84 humidity 70 90 > th dose dependent rect. 5 21
450 166.85 temperature 30 90 < th dose dependent rect. 17 18
452 166.87 humidity 60 10 > th dose dependent rect. 6 20
506 167.34 radiation 1 720 < th dose independent rect. 5 19
585 168.15 temperature 30 270 < th dose dependent rect. 15 17
606 168.23 radiation 1 720 < th dose dependent rect. 5 19
672 168.91 humidity 90 30 < th dose dependent rect. 11 8
700 169.11 temperature 10 270 > th dose dependent rect. 20 9
714 169.26 humidity 90 270 < th dose independent rect. 7 18
717 169.31 humidity 80 90 > th dose independent rect. 5 12
725 169.37 radiation 20 270 < th dose dependent rect. 15 18
726 169.40 temperature 15 90 > th dose independent rect. 7 23
731 169.43 humidity 80 90 > th dose independent rect. 5 14
764 169.67 radiation 10 270 < th dose dependent rect. 2 23
794 169.97 temperature 15 1440 > th dose independent rect. 7 14
886 170.47 radiation 10 270 > th dose independent no NA NA
967 170.49 radiation 10 270 > th dose independent rect. 13 23
995 170.62 temperature 15 1440 > th dose independent rect. 6 9