Os04g0675400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os04g0675400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 470.23 | 1.02 | 11.5 | 2.02 | 9.56 | -3.51 | -0.963 | 1.2 | 0.0799 | 20.2 | 20.3 | 274 | 16.9 | 17.1 |
| 476.23 | 1.02 | 11.5 | 1.91 | 9.55 | -3.55 | -1.26 | -- | 0.106 | 20.2 | 20.3 | 274 | 16.9 | 17.2 |
| 472.9 | 1.01 | 11.5 | 2.06 | 9.57 | -3.53 | -- | 1.2 | 0.0853 | 20.2 | 20.31 | 273 | 16.8 | 17.2 |
| 477.72 | 1.02 | 11.5 | 1.92 | 9.57 | -3.56 | -- | -- | 0.0633 | 20.2 | 20.23 | 278 | 16.8 | 17.3 |
| 1286.55 | 1.67 | 11.2 | 3.37 | -- | -8.93 | -- | 8.33 | 0.018 | -- | -12.19 | 729 | 16.3 | 18.2 |
| 959.19 | 1.45 | 11.6 | 1.05 | 10.9 | -- | -2.08 | -- | -0.504 | 19.4 | -- | -- | -- | -- |
| 971.02 | 1.46 | 11.6 | 1.1 | 10.9 | -- | -- | -- | -0.508 | 19.4 | -- | -- | -- | -- |
| 940.2 | 1.43 | 11.4 | 1.11 | -- | -9.56 | -- | -- | -0.578 | -- | -8.166 | 763 | 16.2 | 17.8 |
| 567.91 | 1.11 | 11.6 | -- | 9.57 | -3.42 | -- | -- | -0.15 | 20.2 | 20.4 | 273 | 16.8 | 17.2 |
| 7322.6 | 4 | 11.4 | 0.924 | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
| 1002.68 | 1.48 | 11.7 | -- | 10.9 | -- | -- | -- | -0.63 | 19.4 | -- | -- | -- | -- |
| 975.22 | 1.45 | 11.4 | -- | -- | -9.5 | -- | -- | -0.686 | -- | -6.469 | 761 | 16.2 | 17.8 |
| 7345.12 | 4 | 11.4 | -- | -- | -- | -- | -- | -0.786 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 478.67 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 17 |
| 9 | 521.31 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 9 |
| 25 | 571.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 36 | 590.95 | temperature | 30 | 10 | < th | dose dependent | sin | 6 | NA |
| 44 | 595.88 | temperature | 10 | 10 | > th | dose dependent | sin | 7 | NA |
| 60 | 605.58 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 12 |
| 73 | 613.47 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 5 |
| 75 | 614.17 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 88 | 617.33 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 95 | 618.60 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 151 | 635.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 154 | 636.10 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 10 |
| 169 | 637.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 176 | 639.48 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 21 |
| 181 | 640.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 199 | 642.99 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 204 | 643.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 220 | 646.34 | temperature | 20 | 720 | < th | dose independent | sin | 11 | NA |
| 270 | 651.21 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 18 |
| 309 | 653.89 | temperature | 20 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 362 | 658.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 18 |
| 370 | 658.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 554 | 672.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 605 | 675.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 641 | 677.95 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 2 |
| 649 | 678.27 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 655 | 678.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 709 | 681.32 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 21 |
| 761 | 683.87 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 23 |
| 791 | 685.21 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 855 | 687.71 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 894 | 689.43 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 908 | 690.22 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |