BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0675400 Os04g0675400|AK068186
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23240.1 | chr5:7826857-7828534 REVERSE LENGTH=466 327 8e-90
AT2G42750.1 | chr2:17793404-17795419 FORWARD LENGTH=345 114 1e-25
AT3G05345.1 | chr3:1522449-1523847 REVERSE LENGTH=245 65 6e-11
AT1G80030.1 | chr1:30105398-30108873 REVERSE LENGTH=501 54 3e-07
AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158 53 4e-07
AT4G39960.1 | chr4:18534194-18536320 FORWARD LENGTH=448 52 1e-06
AT4G36040.1 | chr4:17049708-17050193 REVERSE LENGTH=162 51 1e-06
>AT5G23240.1 | chr5:7826857-7828534 REVERSE LENGTH=466
Length = 465
Score = 327 bits (839), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 154/246 (62%), Positives = 184/246 (74%), Gaps = 7/246 (2%)
Query: 61 VTEYDLYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAGAKGHDMAIVLNEVYSLLSDPAA 120
+T++DLY LLG++RSS +S+IK+AYR+LQKRCHPD+AG GHDMAI+LNE Y LLSDP +
Sbjct: 46 ITDFDLYDLLGIDRSSDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEAYQLLSDPIS 105
Query: 121 RLAYDQEQAKQSEFVGYTGKPLYSAWFGGEAEQRAVFVDEVRCVGCLKCALYANKTFAVE 180
R AYD+EQAK E GYTGKP+YS W G E EQRA FVDEV+CVGCLKCAL A KTFA+E
Sbjct: 106 RQAYDKEQAKLEELRGYTGKPIYSVWCGPETEQRAAFVDEVKCVGCLKCALCAEKTFAIE 165
Query: 181 SVYGRARVVAQWADAEDKILDAIQTCPVDCISMVERSDLAALEFLMSKQPRGRVRVSEGN 240
+ YGRARVVAQWAD E KI +AI+ CPVDCISMVERSDLA LEFLMSKQPRG VR+ GN
Sbjct: 166 TAYGRARVVAQWADPESKIKEAIEACPVDCISMVERSDLAPLEFLMSKQPRGNVRIGVGN 225
Query: 241 TVGARAPDIFNEVSKFQKRFQEMKQKXXXXXXXXXXXXXXXXXXXVQTIRSISNWWYWQ- 299
TVG R ++F +V KFQ+R+ + + V+ IRSISNW YW+
Sbjct: 226 TVGERVSNVFVDVKKFQERYAKAMSR-----TTKETSQREVQISAVEAIRSISNWLYWRS 280
Query: 300 -PFRAP 304
P+ P
Sbjct: 281 SPYTKP 286
>AT2G42750.1 | chr2:17793404-17795419 FORWARD LENGTH=345
Length = 344
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Query: 65 DLYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAGA--KGHDMAIVLNEVYSLLSDPAARL 122
D Y +LG+ + Q EIK AY + K CHPD++G + + + +N++Y +LSDP R+
Sbjct: 76 DYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRM 135
Query: 123 AYDQEQAKQSEFVGYTGKPLYSAWFGGEAEQRAVFVDEVRCVGCLKCALYANKTFAVESV 182
YD E GYT + + + + VFVDE C+GC CA A F +E
Sbjct: 136 VYD-------EIHGYTVTAI-NPFLDDSTPRDHVFVDEFACIGCKNCANVAPDIFQIEED 187
Query: 183 YGRARVVAQWADAEDKILDAIQTCPVDCISMVERSDLAALEFLMSKQPRGRVRVSEGNTV 242
+GRAR Q + D + A++TCPVDCI + L+ LE M + R V + +
Sbjct: 188 FGRARACNQRGNP-DLVQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVALMLSG-M 245
Query: 243 GARAPDIFNEV-SKFQKR 259
G+ A D+F S+++KR
Sbjct: 246 GSGAVDVFRMARSRWEKR 263
>AT3G05345.1 | chr3:1522449-1523847 REVERSE LENGTH=245
Length = 244
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 20/165 (12%)
Query: 67 YGLLGVERSSPQSEIKAAYRSLQKRCHPDVA--GAKGHDMAIVLNEVYSLLSDPAARLAY 124
Y +LGVE S SE+KAA+R+ K+ HPDV G+ M + + Y +L++ Y
Sbjct: 46 YSILGVEPSCSSSELKAAFRAKVKQYHPDVNKDGSNSDIMIRRIIQAYEMLTN------Y 99
Query: 125 DQEQAKQSEFVGYTGKPLYSAWFGGEAEQRAVFVDEVRCVG--C-LKCALYANKTFAVES 181
+ + + E + P E E VFV+EV CVG C C A+ F+ +S
Sbjct: 100 SRSEIIEGECLDPFDHP--------ECEALDVFVNEVLCVGKRCSYPCFETASHVFSCDS 151
Query: 182 VYGRARVVAQWADAEDKILDAIQTCPVDCISMVERSDLAALEFLM 226
G AR ++Q + ++ A+ CP +CI V S LE L+
Sbjct: 152 S-GTARAMSQGHGEDYRVQSAVNQCPRNCIHYVTPSQRIILEELL 195
>AT1G80030.1 | chr1:30105398-30108873 REVERSE LENGTH=501
Length = 500
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 60 WVTEYDLYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAGAKGHDMAIV-LNEVYSLLSDP 118
+ T D Y LGV +S+ EIKAAYR L ++ HPDV G ++ Y +LSD
Sbjct: 70 FATSGDYYATLGVSKSANNKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDE 129
Query: 119 AARLAYDQ--EQAKQSEFVG----YTGKP--LYSAWFG 148
R YDQ E +S G YT P L+ +FG
Sbjct: 130 QKRALYDQYGEAGVKSTVGGASGPYTSNPFDLFETFFG 167
>AT3G13310.1 | chr3:4310827-4311300 REVERSE LENGTH=158
Length = 157
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 66 LYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAGAKGHDMAIVLNEVYSLLSDPAARLAYD 125
LY LL V ++ +EIK AYRSL K HPD + + G D + +++ Y+ L+DP R YD
Sbjct: 65 LYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDF-MEIHKAYATLADPTTRAIYD 123
>AT4G39960.1 | chr4:18534194-18536320 FORWARD LENGTH=448
Length = 447
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 63 EYDLYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAGAKG-HDMAIVLNEVYSLLSDPAAR 121
+ D Y +LGV +++ ++EIK+AYR L + HPDV G D ++ Y +LSD R
Sbjct: 83 DTDFYSVLGVSKNATKAEIKSAYRKLARSYHPDVNKDAGAEDKFKEISNAYEILSDDEKR 142
Query: 122 LAYDQEQAKQSEFVGYTGKPLYSAWF 147
YD+ + G G YS F
Sbjct: 143 SLYDRYGEAGVKGAGMGGMGDYSNPF 168
>AT4G36040.1 | chr4:17049708-17050193 REVERSE LENGTH=162
Length = 161
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 66 LYGLLGVERSSPQSEIKAAYRSLQKRCHPDVAG-----AKGHDMAIVLNEVYSLLSDPAA 120
LY +L V + +IK+AYR L + CHPDVAG + D + ++ Y LSDP
Sbjct: 66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEK 125
Query: 121 RLAYDQEQAKQSE--FVGYTG 139
R YD+ ++S VG +G
Sbjct: 126 RSVYDRRMLRRSRPLTVGTSG 146
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,164,066
Number of extensions: 236843
Number of successful extensions: 905
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 9
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)