Os04g0663200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os04g0663200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.63 | 0.292 | 8.37 | 1.52 | 0.136 | -0.396 | 0.344 | 5.67 | -0.0544 | 11.9 | 30.1 | 1284 | -- | -- |
| 41.84 | 0.301 | 8.51 | 0.389 | 0.149 | 0.306 | 0.247 | -- | -0.11 | 11.3 | 32.5 | 2524 | -- | -- |
| 39.04 | 0.291 | 8.37 | 1.52 | 0.141 | -0.395 | -- | 5.59 | -0.057 | 10.6 | 30.08 | 1283 | -- | -- |
| 41.95 | 0.302 | 8.51 | 0.395 | 0.154 | 0.297 | -- | -- | -0.113 | 10.3 | 32.5 | 2641 | -- | -- |
| 40.2 | 0.295 | 8.38 | 1.54 | -- | -0.404 | -- | 5.43 | -0.0598 | -- | 30.03 | 1384 | -- | -- |
| 44.92 | 0.314 | 8.52 | 0.458 | 0.136 | -- | 0.129 | -- | -0.165 | 10 | -- | -- | -- | -- |
| 44.97 | 0.314 | 8.52 | 0.463 | 0.138 | -- | -- | -- | -0.166 | 9.53 | -- | -- | -- | -- |
| 43.37 | 0.307 | 8.51 | 0.39 | -- | 0.321 | -- | -- | -0.119 | -- | 32.6 | 3230 | -- | -- |
| 45.8 | 0.315 | 8.51 | -- | 0.161 | 0.362 | -- | -- | -0.142 | 9.9 | 32.1 | 2661 | -- | -- |
| 46.1 | 0.317 | 8.52 | 0.462 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 50.61 | 0.333 | 8.53 | -- | 0.138 | -- | -- | -- | -0.217 | 9.28 | -- | -- | -- | -- |
| 46.62 | 0.318 | 8.52 | -- | -- | 0.331 | -- | -- | -0.16 | -- | 32.5 | 5672 | -- | -- |
| 51.72 | 0.336 | 8.53 | -- | -- | -- | -- | -- | -0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.60 | humidity | 50.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 3 | 34.95 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 6 | 35.02 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 8 | 35.15 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 10 | 35.30 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 12 | 35.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 13 | 35.31 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 16 | 35.32 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 23 | 35.33 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 26 | 35.43 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 30 | 35.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 32 | 35.70 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 34 | 35.70 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 35 | 35.71 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 59 | 35.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 61 | 35.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 64 | 35.86 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 67 | 35.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 87 | 35.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 88 | 35.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 6 |
| 92 | 36.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 104 | 36.06 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 106 | 36.07 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 117 | 36.12 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 131 | 36.16 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 142 | 36.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 156 | 36.24 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 159 | 36.25 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 162 | 36.26 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 166 | 36.26 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 176 | 36.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 178 | 36.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 181 | 36.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 184 | 36.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 186 | 36.30 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 262 | 36.40 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 284 | 36.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 291 | 36.48 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 342 | 36.55 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 355 | 36.58 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 380 | 36.61 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 383 | 36.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 386 | 36.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 394 | 36.64 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 425 | 36.65 | humidity | 60.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 454 | 36.65 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 21 |
| 457 | 36.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 494 | 36.70 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 510 | 36.72 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 532 | 36.74 | radiation | 10.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 660 | 36.87 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 680 | 36.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 693 | 36.91 | humidity | 60.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 697 | 36.91 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 698 | 36.91 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 773 | 36.97 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 13 |
| 855 | 37.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 879 | 37.02 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 880 | 37.02 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 996 | 37.06 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 21 |