BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0663200 Os04g0663200|AK105958
(393 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19860.1 | chr1:6891654-6894400 REVERSE LENGTH=414 183 2e-46
AT5G66270.1 | chr5:26473507-26475566 REVERSE LENGTH=450 78 9e-15
AT3G51180.1 | chr3:19013720-19016042 FORWARD LENGTH=522 65 5e-11
>AT1G19860.1 | chr1:6891654-6894400 REVERSE LENGTH=414
Length = 413
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 184/370 (49%), Gaps = 58/370 (15%)
Query: 1 MSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLS 60
+S IPLI+WKC I+L+++W +VAG+ES+E+E QNER LEA YP S+IPPNP +
Sbjct: 71 LSDIPLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGASSIPPNPSVP 130
Query: 61 LDVKDAHYDDSKTLLVPLIPLEDDD-ASDQLEGPTLDLPSHYNITGVSNTPVSAEQQPPC 119
DV+D+H+DD +T+++P++P+EDDD A D D P+ + + ++ E
Sbjct: 131 ADVEDSHHDDQQTIVIPILPVEDDDIAMDSAS----DFPTQSGVDVGTEPSITDEN---- 182
Query: 120 GGAISSGFTIEPQAAVSATVTAIMQTIQSNQNGSMADQNGSTIDQELLFKILSDPSQLQR 179
S+ T+ + A ++AI S + + GS IDQ+LL KILS+P ++
Sbjct: 183 ---TSTSSTLPAGPDIMAALSAI----------SNSKEQGSMIDQDLLIKILSNPKLVEN 229
Query: 180 LMKECGPVRHEQXXXXXXXXXXXXXXXXQITASSPAPFSDHVGTFHGXXXXXXXXXXXXX 239
L+ G +T AP S + G F+
Sbjct: 230 LVANRGSAGSVSSNTSSLYSSSTHEANGVVTT---APISSN-GQFYAQP----------- 274
Query: 240 XXXXXXXSVAMNHPPSSSPAMNFGSALPSSSPSVNFGSVPGRGVGYYKTLIHQHGGERLE 299
P + P M + P P N+G+ P R YYK LI QHGG+R E
Sbjct: 275 -------------PITHIPPMAYTPHAPQDQP--NYGAPPARDASYYKNLIQQHGGDRQE 319
Query: 300 QPFEQH-GMQFGMYRQP-GPPQNGGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNG 357
P QH G ++ + QP G P +++ N RD K + MK C YFNS +GCR+G
Sbjct: 320 TPPVQHLGYRYNL--QPGGGPNPEMVNSSNNNQR--PRDSKPKIMKACMYFNSARGCRHG 375
Query: 358 ASCTFLHDAS 367
A+C + HDA+
Sbjct: 376 ANCMYQHDAT 385
>AT5G66270.1 | chr5:26473507-26475566 REVERSE LENGTH=450
Length = 449
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 1 MSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLS 60
+S IP I+WK PP VL+ + +G +S E +N RI+ LEA YP S IP P L+
Sbjct: 52 ISHIPRIKWKRPPLFVLDDALLVGSGGKSIETRSENLRISKVLEAFYPHRSVIPSRPSLT 111
Query: 61 LDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPSHYNITGVSNTPVSAEQQPPCG 120
L V++ HYDD KT +PL +ED+
Sbjct: 112 LAVEEEHYDDGKTPNIPLTHVEDER----------------------------------D 137
Query: 121 GAISSGFTIEPQAAVSATVTAIMQTIQSNQNGSMADQNGSTIDQELLFKILSDPSQLQRL 180
A S + E AAVS + + + +Q GS +D +LL K+LSDP ++ L
Sbjct: 138 AAAESSHSFEAPAAVSGLGPELSLLASAALSALTKEQ-GSQVDPDLLVKLLSDPKIVENL 196
Query: 181 M 181
+
Sbjct: 197 I 197
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 279 PGRGVGYYKTLIHQHGGERLEQPFEQHGMQFGMYRQPGPPQNGGIDAMNGAAAMVSRDGK 338
P + + Y+K LI +HG + + Y+ G +D + K
Sbjct: 360 PVKDLDYFKNLIREHGA------VKPATTETNNYK-------GRVDH--------KKIVK 398
Query: 339 VRPMKPCAYFNSPKGCRNGASCTFLHDAS 367
VR KPC YFN PKGCR G SC +LHD+S
Sbjct: 399 VRIQKPCMYFNRPKGCRMGESCLYLHDSS 427
>AT3G51180.1 | chr3:19013720-19016042 FORWARD LENGTH=522
Length = 521
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 1 MSQIPLIRWKCPP-HIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFL 59
+S IP I+WK PP + W + G S E + +N RI+ LEAIYP S IP P +
Sbjct: 69 VSNIPRIKWKRPPPKFSVNDTWLVGCGGGSSEWQNENLRISKVLEAIYPHRSAIPSRPSV 128
Query: 60 SLDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPSHYNITGVS-NTPVSAEQQPP 118
S V+ +DDSKT + L P+ED+ S E + +GV+ N E +P
Sbjct: 129 SPAVEAECFDDSKTPAIRLTPIEDESESSSEESSNSKV-----ESGVTANKQGQLETKPL 183
Query: 119 CGGAIS----SGFTIEPQAAVSATVTAIMQTIQSNQNGSMADQNGSTIDQELLFKILSDP 174
C +G + A SA +TA+M+T + GS +D ELL K LSDP
Sbjct: 184 CSTQEQVSGLTGLAPDLSLAASAALTALMKT----------KEQGSLVDTELLIKFLSDP 233
Query: 175 SQLQRLMKE 183
++ L+ +
Sbjct: 234 KLIKNLITD 242
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 260 MNF--GSALPSSSPSVNFGSVPGRGVGYYKTLIHQHGGERLEQPFEQHGMQFGMYRQPGP 317
MNF A+ S+ P V P +G+ Y+K LI +HG + E Q+ Q G++
Sbjct: 413 MNFSRADAIGSAKPVVQ----PMKGLDYFKNLIREHGTDNHET--NQYHSQTGIF----- 461
Query: 318 PQNGGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAP 369
NG ID N C YF + GC G SCT++HD P
Sbjct: 462 --NGRIDNNNKIHQQ------------CIYFGTANGCNMGDSCTYVHDRYRP 499
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,988,841
Number of extensions: 388905
Number of successful extensions: 756
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 6
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)