Os04g0662600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavanone 3- hydroxylase) (Naringenin 3-dioxygenase) (FH3) (TRANSPARENT TESTA 6 protein).
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Os04g0662600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavanone 3- hydroxylase) (Naringenin 3-dioxygenase) (FH3) (TRANSPARENT TESTA 6 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.66 | 0.692 | 3.3 | 1.23 | 0.0989 | 3.34 | 0.763 | 7.49 | 0.296 | 15 | 1.5 | 7215 | -- | -- |
| 253.3 | 0.741 | 3.14 | 2.16 | 0.162 | 2.09 | 0.721 | -- | 0.528 | 14.8 | 3.67 | 8636 | -- | -- |
| 218.31 | 0.688 | 3.3 | 1.25 | 0.0887 | 3.42 | -- | 7.72 | 0.286 | 14.6 | 1.321 | 7206 | -- | -- |
| 227.64 | 0.703 | 3.06 | 2.86 | 0.0698 | 2.14 | -- | -- | 0.846 | 15 | 3.525 | 15841 | -- | -- |
| 218.62 | 0.689 | 3.31 | 1.23 | -- | 3.43 | -- | 7.79 | 0.281 | -- | 1.329 | 7199 | -- | -- |
| 338.45 | 0.862 | 3.25 | 2.03 | 0.182 | -- | 1.05 | -- | 0.0481 | 15 | -- | -- | -- | -- |
| 342.06 | 0.866 | 3.25 | 2.06 | 0.188 | -- | -- | -- | 0.0539 | 14 | -- | -- | -- | -- |
| 203.75 | 0.665 | 3.02 | 3.39 | -- | 2.31 | -- | -- | 1.06 | -- | 3.4 | 28753 | -- | -- |
| 365.85 | 0.891 | 3.12 | -- | 0.073 | 1.8 | -- | -- | 0.476 | 15.6 | 10 | 10022 | -- | -- |
| 344.19 | 0.867 | 3.25 | 2.05 | -- | -- | -- | -- | 0.0495 | -- | -- | -- | -- | -- |
| 453.42 | 0.996 | 3.3 | -- | 0.15 | -- | -- | -- | -0.175 | 13.6 | -- | -- | -- | -- |
| 365.15 | 0.89 | 3.13 | -- | -- | 1.89 | -- | -- | 0.397 | -- | 10 | 10075 | -- | -- |
| 454.8 | 0.995 | 3.3 | -- | -- | -- | -- | -- | -0.178 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 187.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 3 | 187.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 4 | 187.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 189.09 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 6 | 189.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 7 | 189.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 8 | 189.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 9 | 189.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 10 | 189.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 11 | 189.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 12 | 189.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 13 | 189.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 21 | 189.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 22 | 189.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 28 | 190.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 29 | 190.12 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 33 | 190.35 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 34 | 190.35 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 15 |
| 35 | 190.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 62 | 191.11 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 63 | 191.15 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 12 |
| 64 | 191.15 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 65 | 191.15 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 66 | 191.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 67 | 191.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 84 | 191.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 104 | 191.67 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 14 | NA |
| 105 | 191.67 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 14 | NA |
| 107 | 191.67 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 161 | 192.33 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 178 | 192.60 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 196 | 192.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 213 | 192.95 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 6 |
| 238 | 193.26 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 281 | 193.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 289 | 193.80 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 300 | 193.90 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 322 | 194.02 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 326 | 194.05 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 338 | 194.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 395 | 194.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 398 | 194.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 404 | 194.40 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 410 | 194.45 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 422 | 194.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 425 | 194.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 427 | 194.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 455 | 194.70 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 20 | NA |
| 468 | 194.75 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 492 | 194.86 | humidity | 90.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 497 | 194.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 501 | 194.89 | humidity | 90.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 596 | 195.22 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 627 | 195.33 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 21 |
| 645 | 195.37 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 770 | 195.72 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 837 | 195.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 988 | 196.36 | humidity | 80.0 | 43200 | > th | dose independent | sin | 21 | NA |