BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0662600 Os04g0662600|J023084D21
(151 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51240.1 | chr3:19025409-19026658 FORWARD LENGTH=359 86 1e-17
AT1G03410.1 | chr1:844782-846574 REVERSE LENGTH=399 54 4e-08
AT4G16330.2 | chr4:9226298-9227914 REVERSE LENGTH=365 53 7e-08
AT3G19000.1 | chr3:6553668-6554987 REVERSE LENGTH=353 51 3e-07
AT5G43440.1 | chr5:17455356-17456608 REVERSE LENGTH=366 50 3e-07
AT5G59540.1 | chr5:23996293-23997576 REVERSE LENGTH=367 50 4e-07
AT5G43450.1 | chr5:17457321-17458714 REVERSE LENGTH=363 50 4e-07
AT1G06620.1 | chr1:2025618-2027094 FORWARD LENGTH=366 50 5e-07
AT1G03400.1 | chr1:842895-844158 REVERSE LENGTH=352 50 5e-07
AT4G10500.1 | chr4:6491089-6492342 FORWARD LENGTH=350 49 7e-07
AT5G59530.1 | chr5:23994434-23995715 REVERSE LENGTH=365 49 9e-07
AT3G13610.1 | chr3:4449448-4450616 FORWARD LENGTH=362 49 1e-06
AT2G38240.1 | chr2:16012723-16014666 REVERSE LENGTH=354 48 2e-06
AT3G11180.2 | chr3:3504249-3506871 FORWARD LENGTH=404 47 3e-06
>AT3G51240.1 | chr3:19025409-19026658 FORWARD LENGTH=359
Length = 358
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/42 (95%), Positives = 40/42 (95%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
PQPDLTLGLKRHTDPGTITLLLQD VGGLQATRD GKTWITV
Sbjct: 206 PQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITV 247
>AT1G03410.1 | chr1:844782-846574 REVERSE LENGTH=399
Length = 398
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
PQPDLTLG+ +HTD IT+LLQD +GGLQ D + W+ VS
Sbjct: 260 PQPDLTLGISKHTDFSFITILLQDNIGGLQVIHD--QCWVDVS 300
>AT4G16330.2 | chr4:9226298-9227914 REVERSE LENGTH=365
Length = 364
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
PQP+LTLGL+ H+D G ITLL+QD V GLQ +DA W+TV
Sbjct: 233 PQPELTLGLQSHSDFGAITLLIQDDVEGLQLYKDA--QWLTV 272
>AT3G19000.1 | chr3:6553668-6554987 REVERSE LENGTH=353
Length = 352
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
P P+L LG+ RH D G +T+L QD VGGLQ +R + WI V
Sbjct: 211 PNPELALGVGRHKDGGALTVLAQDSVGGLQVSRRSDGQWIPV 252
>AT5G43440.1 | chr5:17455356-17456608 REVERSE LENGTH=366
Length = 365
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
PQPDLTLG+ +HTD IT+LLQD +GGLQ +W+ V+
Sbjct: 227 PQPDLTLGISKHTDNSFITILLQDQIGGLQVLHQ--DSWVDVT 267
>AT5G59540.1 | chr5:23996293-23997576 REVERSE LENGTH=367
Length = 366
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
PQPDLTLG+ +H+D +TLLLQD +GGLQ +W+ VS
Sbjct: 228 PQPDLTLGITKHSDNSFLTLLLQDNIGGLQILHQ--DSWVDVS 268
>AT5G43450.1 | chr5:17457321-17458714 REVERSE LENGTH=363
Length = 362
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
PQPDLTLG+ +HTD +TLLLQD +GGLQ + W+ V
Sbjct: 224 PQPDLTLGISKHTDNSFLTLLLQDQIGGLQVLHE--DYWVDV 263
>AT1G06620.1 | chr1:2025618-2027094 FORWARD LENGTH=366
Length = 365
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 2/42 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
PQPDLTLGL +H+D +T+LLQD +GGLQ D + W+ V
Sbjct: 227 PQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHD--QYWVDV 266
>AT1G03400.1 | chr1:842895-844158 REVERSE LENGTH=352
Length = 351
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
PQPDLT+G+ +HTD +T+LLQD VGGLQ + + WI V+
Sbjct: 213 PQPDLTIGINKHTDISFLTVLLQDNVGGLQVFHE--QYWIDVT 253
>AT4G10500.1 | chr4:6491089-6492342 FORWARD LENGTH=350
Length = 349
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
P+P+LT GL H DP IT+LLQD V GLQ +D W+ VS
Sbjct: 210 PEPELTYGLPGHKDPTVITVLLQDQVSGLQVFKD--DKWVAVS 250
>AT5G59530.1 | chr5:23994434-23995715 REVERSE LENGTH=365
Length = 364
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITVS 43
PQPDLTLG+ +H+D +T+LLQD +GGLQ +W+ VS
Sbjct: 226 PQPDLTLGISKHSDNSFLTVLLQDNIGGLQILHQ--DSWVDVS 266
>AT3G13610.1 | chr3:4449448-4450616 FORWARD LENGTH=362
Length = 361
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDAGKTWITV 42
P PDLT+G+ RH+D ++T+LLQD +GGL A W+ V
Sbjct: 224 PNPDLTVGVGRHSDVSSLTILLQDQIGGLHVRSLASGNWVHV 265
>AT2G38240.1 | chr2:16012723-16014666 REVERSE LENGTH=354
Length = 353
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 1 PQPDLTLGLKRHTDPGTITLLLQD-LVGGLQATRDAGKTWITV 42
PQP LTLGL H+DPG IT+LL D V GLQ R G W+T+
Sbjct: 215 PQPQLTLGLSSHSDPGGITILLPDEKVAGLQVRR--GDGWVTI 255
>AT3G11180.2 | chr3:3504249-3506871 FORWARD LENGTH=404
Length = 403
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 1 PQPDLTLGLKRHTDPGTITLLL-QDLVGGLQATRDAGKTWITVSRSR 46
PQP+L LGL H+DPG +T+LL D V GLQ G TWITV+ R
Sbjct: 262 PQPELALGLSPHSDPGGMTILLPDDQVVGLQVRH--GDTWITVNPLR 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,343,576
Number of extensions: 60355
Number of successful extensions: 254
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 14
Length of query: 151
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 61
Effective length of database: 8,639,129
Effective search space: 526986869
Effective search space used: 526986869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)