Os04g0661900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN8a.
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Os04g0661900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome subunit RPN8a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.99 | 0.176 | 13.3 | -0.367 | 0.274 | 0.00647 | -0.0979 | -1.22 | 0.0175 | 23.5 | 20.31 | 2028 | -- | -- |
| 17.24 | 0.193 | 13.2 | 0.0821 | 0.291 | -0.136 | -0.13 | -- | 0.172 | 23.6 | 24.34 | 47520 | -- | -- |
| 14.02 | 0.174 | 13.3 | -0.366 | 0.271 | 0.0113 | -- | -1.22 | 0.0165 | 23.5 | 20.4 | 2090 | -- | -- |
| 17.24 | 0.193 | 13.2 | 0.0618 | 0.276 | -0.117 | -- | -- | 0.169 | 23.7 | 27.8 | 47520 | -- | -- |
| 18.61 | 0.201 | 13.3 | -0.346 | -- | 0.0591 | -- | -1.07 | 0.0257 | -- | 19.8 | 2485 | -- | -- |
| 17.51 | 0.196 | 13.3 | -0.0645 | 0.274 | -- | -0.181 | -- | 0.108 | 23.6 | -- | -- | -- | -- |
| 17.65 | 0.197 | 13.3 | -0.0572 | 0.274 | -- | -- | -- | 0.109 | 23.6 | -- | -- | -- | -- |
| 20.43 | 0.211 | 13.2 | -0.155 | -- | 0.231 | -- | -- | 0.0964 | -- | 18.4 | 2388 | -- | -- |
| 17.3 | 0.194 | 13.2 | -- | 0.278 | -0.095 | -- | -- | 0.153 | 23.6 | 27.63 | 47520 | -- | -- |
| 22.38 | 0.221 | 13.2 | -0.0496 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 17.74 | 0.197 | 13.3 | -- | 0.274 | -- | -- | -- | 0.115 | 23.6 | -- | -- | -- | -- |
| 21 | 0.213 | 13.2 | -- | -- | 0.238 | -- | -- | 0.0897 | -- | 18.4 | 2382 | -- | -- |
| 22.44 | 0.221 | 13.2 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 3 | 13.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 4 | 13.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 6 | 13.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 53 | 13.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 62 | 13.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 68 | 13.49 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 69 | 13.49 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 85 | 13.53 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 132 | 13.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 205 | 13.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 216 | 13.76 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 307 | 13.88 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 380 | 13.95 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 400 | 13.97 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 403 | 13.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 427 | 14.01 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 522 | 14.08 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 557 | 14.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 569 | 14.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 573 | 14.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 691 | 14.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 11 |
| 692 | 14.22 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 710 | 14.23 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 752 | 14.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 754 | 14.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 16 |
| 768 | 14.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 787 | 14.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 790 | 14.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 841 | 14.28 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 843 | 14.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 853 | 14.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 856 | 14.28 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 949 | 14.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 994 | 14.31 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 995 | 14.31 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 996 | 14.31 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |