BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0661900 Os04g0661900|AK103551
         (159 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05780.1  | chr5:1735862-1738176 FORWARD LENGTH=309            264   1e-71
AT3G11270.1  | chr3:3528989-3531317 FORWARD LENGTH=311            259   6e-70

>AT5G05780.1 | chr5:1735862-1738176 FORWARD LENGTH=309
          Length = 308

 Score =  264 bits (675), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/157 (82%), Positives = 142/157 (90%)

Query: 1   RECYSKTVKRCLFMFLQQIAAHEVEEIGVEHLLRDVKDTTISTLATEVTSKLAALKGLDA 60
           +E  ++  ++       +IAAHEVEEIGVEHLLRDVKDTTISTLATEVT+KL ALKGLDA
Sbjct: 152 KENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDA 211

Query: 61  RLREIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLS 120
           RLREIR YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNEL+KAF+VKTNDMMLVIYLS
Sbjct: 212 RLREIRSYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLS 271

Query: 121 SLIRSVIALHNLINNKMLNKEHEKAEDSKPTAIPSAA 157
           SLIRSVIALHNLINNK+LNKEHEKAEDSKP AIP+ +
Sbjct: 272 SLIRSVIALHNLINNKLLNKEHEKAEDSKPVAIPATS 308



>AT3G11270.1 | chr3:3528989-3531317 FORWARD LENGTH=311
          Length = 310

 Score =  259 bits (661), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/154 (83%), Positives = 139/154 (90%)

Query: 1   RECYSKTVKRCLFMFLQQIAAHEVEEIGVEHLLRDVKDTTISTLATEVTSKLAALKGLDA 60
           +E  ++  ++       +IAAHEVEEIGVEHLLRDVKDTTISTLATEVT+KL ALKGLDA
Sbjct: 152 KENATQKSQQVFVHVPTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDA 211

Query: 61  RLREIRGYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELIKAFAVKTNDMMLVIYLS 120
           RLREIR YLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNEL+KAFAVKTNDMMLVIYLS
Sbjct: 212 RLREIRTYLDLVIEGKLPLNHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLS 271

Query: 121 SLIRSVIALHNLINNKMLNKEHEKAEDSKPTAIP 154
           SLIRSVIALH+LINNK+LNKEHEKAEDSKP  IP
Sbjct: 272 SLIRSVIALHSLINNKLLNKEHEKAEDSKPVDIP 305



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,080,687
Number of extensions: 109404
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)