Os04g0661700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0661700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.09 | 0.27 | 11.3 | 0.843 | 0.287 | -0.662 | -0.441 | 1.46 | 0.651 | 19 | 15.98 | 537 | -- | -- |
| 34.38 | 0.273 | 11.4 | 0.608 | 0.293 | -0.682 | -0.135 | -- | 0.58 | 19.2 | 14.19 | 552 | -- | -- |
| 33.53 | 0.27 | 11.3 | 0.845 | 0.291 | -0.689 | -- | 1.36 | 0.657 | 19.1 | 15.87 | 540 | -- | -- |
| 34.37 | 0.273 | 11.4 | 0.592 | 0.29 | -0.679 | -- | -- | 0.581 | 19.2 | 14.19 | 530 | -- | -- |
| 34.98 | 0.275 | 11.3 | 0.886 | -- | -0.478 | -- | 1.42 | 0.643 | -- | 14.44 | 1301 | -- | -- |
| 39.63 | 0.295 | 11.4 | 0.432 | 0.108 | -- | -0.247 | -- | 0.48 | 18.7 | -- | -- | -- | -- |
| 39.73 | 0.295 | 11.4 | 0.435 | 0.11 | -- | -- | -- | 0.479 | 19.8 | -- | -- | -- | -- |
| 36.74 | 0.282 | 11.4 | 0.578 | -- | -0.463 | -- | -- | 0.562 | -- | 12.03 | 1297 | -- | -- |
| 42.59 | 0.304 | 11.4 | -- | 0.213 | -0.408 | -- | -- | 0.481 | 19.3 | 12.89 | 485 | -- | -- |
| 40.38 | 0.297 | 11.4 | 0.434 | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
| 44.72 | 0.313 | 11.4 | -- | 0.107 | -- | -- | -- | 0.431 | 20.1 | -- | -- | -- | -- |
| 43.55 | 0.307 | 11.4 | -- | -- | -0.285 | -- | -- | 0.403 | -- | 30.3 | 488 | -- | -- |
| 45.35 | 0.314 | 11.4 | -- | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 2 | 31.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 6 | 31.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 8 | 31.46 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 9 | 31.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 13 | 31.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 7 |
| 18 | 31.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 9 |
| 34 | 31.77 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 49 | 31.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 56 | 31.87 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 57 | 31.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 132 | 32.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 142 | 32.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 152 | 32.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 223 | 32.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 510 | 32.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 552 | 32.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 579 | 33.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 737 | 33.22 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 8 | 15 |
| 738 | 33.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 814 | 33.34 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 861 | 33.40 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 876 | 33.42 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 877 | 33.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 885 | 33.43 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 897 | 33.45 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 902 | 33.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 904 | 33.46 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 906 | 33.46 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 911 | 33.46 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 8 |
| 931 | 33.48 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 932 | 33.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 958 | 33.50 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 16 |