BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0661700 Os04g0661700|AK066532
         (948 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70620.3  | chr1:26626634-26630777 FORWARD LENGTH=958           94   5e-19

>AT1G70620.3 | chr1:26626634-26630777 FORWARD LENGTH=958
          Length = 957

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 94/197 (47%), Gaps = 24/197 (12%)

Query: 355 SWIPSTT--VLFPQASVPPQAAQMDPSVHAAPLFGAVSGSSYIPP-------------AA 399
           +W P TT  V++P     P +AQ  P   ++     VSG   +PP               
Sbjct: 303 AWQPHTTSGVVYPPI---PSSAQSIPQHDSSMAIPPVSGH-IMPPYGRFPPPNPQPVGPP 358

Query: 400 FGVGNVTEAFPVDANTPFNVTERS---KKPPVPNWLREELLKKKSTSVSASVQHSTEFHS 456
           +  G      PV A    +    S   KK PVPNWL+EELLKKK+     S     E  S
Sbjct: 359 YAFGTKPPLHPVAAFMDDSYAASSVPPKKAPVPNWLKEELLKKKADLGRPSSGRFEERES 418

Query: 457 KGSEDAEKTLKSSDQADSRSVDSAKSTXXXXXXXXXXXAARMAAMNQEIKRVLTEVLLKV 516
              +   K    +DQ D +S   + S            AAR   +N EIKR+LTEVLLKV
Sbjct: 419 MDDDVLYKPPTKADQPDKKSF--SPSNSSDEEEEDEMDAARTTEINMEIKRILTEVLLKV 476

Query: 517 TDDLFDEIATKVLNEDD 533
           TD+LFDEIATKV+NED+
Sbjct: 477 TDELFDEIATKVINEDE 493



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.306    0.124    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,012,210
Number of extensions: 653831
Number of successful extensions: 2658
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2657
Number of HSP's successfully gapped: 2
Length of query: 948
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 840
Effective length of database: 8,145,641
Effective search space: 6842338440
Effective search space used: 6842338440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 116 (49.3 bits)