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Os04g0661200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF941 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0165) R2 : 0.745
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.45 (0.0397) R2dC : 0.749 R2C : 0.745
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0078 (0.0346) R2dN8 : 3.67e-05 R2N8 : -0.00364
σ : 0.31
deviance : 44
__
_____
C
peak time of C : 22.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.52 0.284 10.1 -0.582 1.28 0.491 0.634 -1.63 -0.21 22.6 26.5 828 -- --
38.23 0.288 10.1 -0.214 1.29 0.387 0.414 -- -0.0858 22.7 26.6 678 -- --
37.95 0.287 10.1 -0.564 1.29 0.513 -- -1.52 -0.182 22.6 26.89 880 -- --
38.67 0.29 10.1 -0.227 1.28 0.409 -- -- -0.0969 22.8 26.5 677 -- --
112.28 0.494 10.1 -0.801 -- 1.26 -- -1.23 -0.425 -- 26.2 810 -- --
42.82 0.307 10.1 -0.0866 1.45 -- 0.468 -- -0.00251 22.4 -- -- -- --
43.71 0.31 10.1 -0.106 1.45 -- -- -- -0.00396 22.4 -- -- -- --
115.22 0.5 10.1 -0.454 -- 1.19 -- -- -0.329 -- 26.3 799 -- --
39.97 0.294 10.1 -- 1.3 0.363 -- -- -0.0854 22.8 26.2 639 -- --
172.45 0.614 10 -0.0818 -- -- -- -- 0.00099 -- -- -- -- --
44 0.31 10.1 -- 1.45 -- -- -- 0.0078 22.4 -- -- -- --
120.32 0.511 10.1 -- -- 1.1 -- -- -0.255 -- 26.22 791 -- --
172.62 0.613 10 -- -- -- -- -- 0.0101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.80 temperature 20.0 720 > th dose dependent rect. 17 2
3 31.39 temperature 30.0 270 < th dose dependent rect. 14 9
5 31.56 temperature 25.0 720 > th dose independent rect. 17 2
7 31.61 temperature 20.0 90 > th dose independent rect. 24 5
11 31.75 temperature 25.0 270 < th dose independent rect. 15 8
12 31.75 temperature 30.0 10 < th dose dependent rect. 16 10
24 32.07 temperature 15.0 90 > th dose dependent rect. 24 5
32 32.18 temperature 15.0 90 > th dose dependent rect. 18 11
33 32.18 temperature 10.0 90 > th dose dependent rect. 15 14
42 32.33 temperature 20.0 270 > th dose independent rect. 24 2
48 32.41 temperature 30.0 10 < th dose dependent rect. 14 12
59 32.56 temperature 15.0 270 > th dose dependent rect. 24 3
76 32.78 temperature 15.0 90 > th dose dependent rect. 13 16
99 33.02 atmosphere 1000.0 90 > th dose independent rect. 24 5
123 33.17 temperature 25.0 10 < th dose independent rect. 16 8
126 33.18 wind 7.0 90 < th dose independent rect. 15 14
149 33.33 temperature 15.0 10 > th dose dependent rect. 16 13
150 33.34 radiation 1.0 90 < th dose independent rect. 24 6
154 33.36 humidity 50.0 90 > th dose independent rect. 5 21
156 33.37 atmosphere 995.0 90 > th dose dependent rect. 24 5
167 33.41 humidity 60.0 90 > th dose dependent rect. 24 5
176 33.44 radiation 1.0 90 < th dose dependent rect. 24 6
189 33.49 atmosphere 995.0 270 > th dose dependent rect. 24 3
197 33.53 temperature 20.0 90 > th dose independent rect. 13 16
198 33.53 atmosphere 995.0 90 > th dose dependent rect. 2 3
210 33.59 radiation 10.0 10 < th dose dependent rect. 2 4
213 33.59 temperature 30.0 10 < th dose dependent rect. 19 7
218 33.62 temperature 20.0 90 > th dose independent rect. 15 14
221 33.63 radiation 1.0 90 < th dose dependent rect. 24 10
224 33.64 humidity 80.0 90 > th dose independent rect. 1 4
243 33.67 radiation 1.0 90 < th dose independent rect. 24 12
245 33.68 radiation 1.0 90 < th dose independent rect. 24 10
252 33.70 wind 9.0 90 < th dose independent rect. 2 3
253 33.70 temperature 10.0 90 > th dose independent rect. 2 3
255 33.70 temperature 30.0 90 < th dose independent rect. 2 3
256 33.70 humidity 50.0 90 > th dose independent rect. 2 3
260 33.70 atmosphere 1010.0 90 < th dose independent rect. 2 3
262 33.70 radiation 20.0 90 < th dose independent rect. 2 3
267 33.70 temperature 10.0 90 > th dose independent rect. 5 21
275 33.71 atmosphere 1000.0 10 > th dose independent rect. 24 6
340 33.78 precipitation 0.1 90 < th dose independent rect. 2 3
344 33.78 temperature 10.0 30 > th dose dependent sin 13 NA
345 33.78 precipitation 0.1 90 < th dose dependent rect. 2 3
357 33.80 humidity 50.0 270 > th dose independent rect. 3 21
358 33.80 precipitation 0.1 90 < th dose independent rect. 5 21
365 33.80 precipitation 0.1 90 < th dose dependent rect. 5 21
381 33.81 temperature 10.0 270 > th dose independent rect. 3 21
390 33.82 precipitation 0.1 270 < th dose independent rect. 24 3
392 33.82 precipitation 0.1 270 < th dose dependent rect. 24 3
404 33.83 temperature 10.0 270 > th dose dependent sin 15 NA
428 33.87 wind 9.0 90 < th dose dependent rect. 15 14
470 33.99 humidity 50.0 90 > th dose dependent rect. 5 21
472 34.00 temperature 30.0 90 < th dose dependent sin 15 NA
484 34.04 temperature 20.0 90 > th dose independent rect. 18 11
490 34.05 temperature 30.0 10 < th dose dependent sin 15 NA
496 34.06 radiation 1.0 90 < th dose dependent sin 5 NA
506 34.08 atmosphere 995.0 90 > th dose independent rect. 5 19
510 34.08 temperature 15.0 270 > th dose dependent rect. 11 16
516 34.09 wind 9.0 90 < th dose dependent rect. 24 5
530 34.11 temperature 20.0 10 > th dose independent rect. 22 8
533 34.11 precipitation 0.1 270 < th dose independent rect. 3 21
536 34.11 precipitation 0.1 270 < th dose dependent rect. 3 21
561 34.19 temperature 25.0 270 < th dose independent rect. 19 2
567 34.20 temperature 20.0 10 > th dose independent rect. 18 12
600 34.25 humidity 50.0 10 > th dose dependent rect. 24 6
627 34.30 atmosphere 1010.0 10 < th dose independent rect. 24 6
650 34.35 wind 9.0 90 < th dose dependent rect. 13 16
651 34.36 atmosphere 1000.0 10 > th dose independent rect. 2 4
667 34.38 radiation 1.0 90 < th dose independent sin 6 NA
703 34.42 wind 3.0 90 < th dose dependent rect. 24 5
711 34.44 radiation 1.0 720 > th dose independent rect. 17 1
721 34.44 humidity 50.0 10 > th dose dependent rect. 6 20
725 34.45 atmosphere 995.0 10 > th dose dependent rect. 2 4
729 34.46 wind 7.0 90 < th dose independent rect. 13 16
748 34.48 wind 9.0 10 < th dose independent rect. 24 6
750 34.48 temperature 10.0 1440 > th dose independent rect. 1 6
754 34.48 temperature 30.0 1440 < th dose independent rect. 1 6
759 34.48 humidity 50.0 1440 > th dose independent rect. 1 6
767 34.48 atmosphere 995.0 1440 > th dose independent rect. 1 6
769 34.48 radiation 40.0 1440 < th dose independent rect. 1 6
777 34.48 temperature 10.0 1440 > th dose independent rect. 7 18
780 34.48 wind 9.0 90 < th dose independent rect. 5 19
813 34.53 wind 1.0 90 > th dose independent rect. 5 21
819 34.54 atmosphere 995.0 270 > th dose independent rect. 3 21
854 34.58 temperature 20.0 10 > th dose independent rect. 20 10
855 34.58 wind 1.0 270 > th dose independent rect. 3 21
981 34.72 radiation 20.0 1440 < th dose independent rect. 1 5
996 34.72 temperature 15.0 10 > th dose dependent rect. 22 8
999 34.73 radiation 10.0 720 < th dose independent rect. 17 2