Os04g0659900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Probable translation factor pelota family protein.
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Os04g0659900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Probable translation factor pelota family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.83 | 0.22 | 10.9 | -0.758 | 0.115 | 0.221 | -0.112 | 0.504 | 0.0961 | 21.4 | 1000 | 4906 | -- | -- |
| 22 | 0.218 | 10.9 | -0.734 | 0.114 | 0.293 | -0.128 | -- | 0.0894 | 21.3 | 999.6 | 5403 | -- | -- |
| 21.87 | 0.218 | 10.9 | -0.761 | 0.116 | 0.234 | -- | 0.582 | 0.0967 | 21.5 | 1001 | 4976 | -- | -- |
| 21.49 | 0.216 | 10.9 | -0.719 | 0.123 | 0.39 | -- | -- | 0.0875 | 21.5 | 999.8 | 10156 | -- | -- |
| 22.06 | 0.219 | 10.9 | -0.809 | -- | 0.123 | -- | 1.26 | 0.103 | -- | 1000 | 10140 | -- | -- |
| 24.4 | 0.232 | 10.9 | -0.788 | 0.114 | -- | -0.121 | -- | 0.121 | 21.4 | -- | -- | -- | -- |
| 24.45 | 0.232 | 10.9 | -0.784 | 0.114 | -- | -- | -- | 0.121 | 21.6 | -- | -- | -- | -- |
| 22.24 | 0.22 | 10.9 | -0.717 | -- | 0.393 | -- | -- | 0.0878 | -- | 999.7 | 10156 | -- | -- |
| 34.38 | 0.273 | 10.9 | -- | 0.112 | 0.506 | -- | -- | 0.137 | 21.2 | 999.6 | 11744 | -- | -- |
| 25.22 | 0.235 | 10.9 | -0.783 | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
| 40.65 | 0.298 | 10.9 | -- | 0.114 | -- | -- | -- | 0.208 | 21 | -- | -- | -- | -- |
| 35.06 | 0.276 | 10.9 | -- | -- | 0.508 | -- | -- | 0.148 | -- | 999.2 | 11706 | -- | -- |
| 41.4 | 0.3 | 10.9 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.54 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 2 | 19.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 3 | 19.74 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 5 | 19.78 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 14 | 19.90 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 29 | 20.06 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 44 | 20.16 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 55 | 20.19 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 81 | 20.28 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 129 | 20.40 | wind | 5.0 | 14400 | < th | dose independent | rect. | 12 | 13 |
| 149 | 20.44 | wind | 5.0 | 14400 | > th | dose independent | rect. | 13 | 12 |
| 157 | 20.45 | wind | 5.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 196 | 20.50 | wind | 3.0 | 14400 | > th | dose dependent | sin | 20 | NA |
| 232 | 20.55 | wind | 5.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 264 | 20.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 275 | 20.59 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 11 | 10 |
| 400 | 20.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 402 | 20.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 409 | 20.73 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 435 | 20.75 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 448 | 20.76 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 454 | 20.77 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 475 | 20.79 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 506 | 20.82 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 510 | 20.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 590 | 20.89 | wind | 9.0 | 14400 | < th | dose dependent | sin | 20 | NA |
| 608 | 20.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 609 | 20.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 618 | 20.92 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 626 | 20.92 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 650 | 20.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 693 | 20.97 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 705 | 20.98 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 739 | 21.00 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 740 | 21.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 776 | 21.02 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 808 | 21.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 817 | 21.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 826 | 21.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 835 | 21.04 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 840 | 21.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 880 | 21.06 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 894 | 21.07 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 919 | 21.08 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 920 | 21.08 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 921 | 21.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 930 | 21.08 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 931 | 21.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 950 | 21.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 961 | 21.09 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 988 | 21.10 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 2 |