FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0657500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipase, class 3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.5 (0.0255) R2 : 0.815
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.72 (0.0832) R2dC : 0.3 R2C : 0.608
β3 : 1.9 (0.11) R2dE : 0.209 R2E : 0.515
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.0535) R2dN8 : 0.00214 R2N8 : -0.00522
σ : 0.474
deviance : 103.65
__
_____
C
peak time of C : 8.26
E
wheather : temperature
threshold : 6.911
memory length : 206
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 18.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.06 0.441 14.5 -0.434 1.73 1.95 0.968 1.7 -0.159 8.24 9.9 211 19.1 18.3
89.99 0.442 14.5 -0.558 1.73 1.98 1.6 -- -0.175 8.22 9.09 200 19.1 18.5
89.68 0.441 14.5 -0.334 1.74 1.94 -- 2.61 -0.14 8.21 9.06 207 19.1 18.4
97.25 0.459 14.5 -0.506 1.71 2.01 -- -- -0.19 8.32 7.983 204 19 18.6
133.3 0.538 14.6 -0.1 -- 3.36 -- 3.05 -0.216 -- -1.234 423 18.6 17.7
154.77 0.583 14.4 -0.349 2.69 -- 1.81 -- -0.0376 7.88 -- -- -- --
164.32 0.6 14.4 -0.302 2.69 -- -- -- -0.04 7.86 -- -- -- --
127.42 0.526 14.5 -0.402 -- 2.99 -- -- -0.0394 -- -2.122 340 20.8 15.1
103.65 0.474 14.5 -- 1.72 1.9 -- -- -0.122 8.26 6.911 206 19.1 18.5
558.04 1.1 14.5 -0.271 -- -- -- -- -0.0032 -- -- -- -- --
166.72 0.604 14.4 -- 2.69 -- -- -- -0.00634 7.86 -- -- -- --
132.88 0.537 14.5 -- -- 3.05 -- -- -0.0887 -- -2.14 343 20.8 15.1
559.97 1.1 14.5 -- -- -- -- -- 0.0269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.79 temperature 10.0 270 > th dose dependent rect. 19 18
20 98.56 atmosphere 995.0 270 > th dose dependent rect. 13 5
21 99.17 temperature 10.0 10 > th dose dependent rect. 21 17
28 100.08 atmosphere 995.0 270 > th dose independent rect. 13 5
34 100.55 atmosphere 995.0 270 > th dose dependent rect. 14 3
37 100.63 radiation 40.0 270 < th dose independent rect. 14 3
39 100.66 temperature 10.0 270 > th dose dependent rect. 6 7
42 101.00 atmosphere 995.0 270 > th dose independent rect. 14 3
58 102.57 wind 1.0 270 > th dose independent rect. 13 5
61 102.79 wind 9.0 270 < th dose independent rect. 18 19
65 103.08 temperature 10.0 270 > th dose independent rect. 13 5
67 103.08 atmosphere 1010.0 270 < th dose independent rect. 13 5
69 103.08 temperature 10.0 270 > th dose independent rect. 18 19
70 103.08 wind 9.0 270 < th dose independent rect. 17 21
71 103.23 humidity 50.0 270 > th dose independent rect. 18 19
81 103.53 precipitation 0.1 270 < th dose independent rect. 17 21
82 103.53 precipitation 0.1 270 < th dose dependent rect. 17 21
83 103.59 temperature 10.0 270 > th dose independent rect. 14 3
85 103.59 atmosphere 1010.0 270 < th dose independent rect. 14 3
87 103.59 temperature 10.0 270 > th dose independent rect. 17 21
93 103.74 precipitation 0.1 270 < th dose independent rect. 14 3
94 103.74 wind 9.0 270 < th dose independent rect. 13 5
95 103.74 precipitation 0.1 270 < th dose dependent rect. 14 3
103 103.92 atmosphere 995.0 270 > th dose independent rect. 19 18
105 103.95 wind 1.0 270 > th dose independent rect. 14 3
107 103.98 precipitation 0.1 270 < th dose independent rect. 18 19
108 103.98 precipitation 0.1 270 < th dose dependent rect. 18 19
113 104.19 wind 9.0 270 < th dose independent rect. 14 3
116 104.27 atmosphere 1015.0 270 < th dose independent rect. 19 18
121 104.40 precipitation 0.1 270 < th dose independent rect. 13 5
122 104.40 precipitation 0.1 270 < th dose dependent rect. 13 5
200 107.29 atmosphere 995.0 10 > th dose dependent rect. 14 7
209 107.32 temperature 10.0 10 > th dose dependent rect. 10 15
216 107.46 temperature 10.0 90 > th dose dependent rect. 9 16
219 107.49 humidity 50.0 270 > th dose independent rect. 14 3
228 107.70 atmosphere 995.0 10 > th dose dependent rect. 15 5
241 108.01 radiation 1.0 270 > th dose independent rect. 14 3
244 108.04 atmosphere 995.0 270 > th dose independent rect. 1 17
246 108.06 temperature 10.0 270 > th dose dependent rect. 18 7
252 108.11 radiation 40.0 90 < th dose dependent rect. 14 5
261 108.28 temperature 30.0 270 < th dose independent rect. 14 3
286 108.60 wind 9.0 270 < th dose independent rect. 9 14
287 108.64 atmosphere 995.0 270 > th dose independent rect. 14 16
304 109.03 temperature 30.0 270 < th dose independent rect. 23 10
306 109.06 atmosphere 995.0 270 > th dose independent rect. 13 18
307 109.08 wind 1.0 270 > th dose independent rect. 18 19
312 109.14 temperature 10.0 270 > th dose independent rect. 23 10
313 109.14 humidity 50.0 270 > th dose independent rect. 23 10
314 109.14 atmosphere 995.0 270 > th dose independent rect. 23 10
315 109.14 temperature 10.0 270 > th dose independent rect. 9 14
321 109.18 wind 9.0 270 < th dose independent rect. 23 10
329 109.30 radiation 40.0 10 < th dose dependent rect. 14 7
333 109.34 radiation 40.0 270 < th dose dependent rect. 15 2
335 109.35 temperature 25.0 270 > th dose independent rect. 19 18
340 109.43 temperature 20.0 270 > th dose independent rect. 6 7
352 109.57 radiation 20.0 30 < th dose independent rect. 14 7
377 110.00 radiation 1.0 270 > th dose independent rect. 18 20
403 110.26 atmosphere 995.0 10 > th dose independent rect. 14 7
406 110.30 precipitation 0.1 270 < th dose independent rect. 23 10
407 110.30 precipitation 0.1 270 < th dose dependent rect. 23 10
408 110.33 radiation 40.0 270 < th dose independent rect. 23 9
412 110.36 atmosphere 1015.0 270 < th dose independent rect. 8 15
429 110.49 temperature 15.0 10 > th dose dependent rect. 8 8
435 110.56 radiation 1.0 270 > th dose independent rect. 6 8
465 110.71 wind 9.0 270 < th dose independent rect. 18 7
470 110.75 temperature 10.0 270 > th dose independent rect. 18 7
471 110.75 humidity 50.0 270 > th dose independent rect. 18 7
472 110.75 radiation 20.0 270 < th dose independent rect. 18 7
475 110.75 temperature 10.0 270 > th dose independent rect. 1 17
476 110.75 atmosphere 1015.0 270 < th dose independent rect. 1 17
491 110.85 radiation 40.0 270 < th dose dependent rect. 18 7
512 110.99 wind 1.0 270 > th dose independent rect. 18 7
528 111.12 precipitation 0.1 270 < th dose independent rect. 6 8
529 111.12 precipitation 0.1 270 < th dose dependent rect. 6 8
533 111.15 radiation 40.0 10 < th dose independent rect. 14 7
549 111.19 wind 9.0 270 < th dose independent rect. 6 8
557 111.25 wind 9.0 10 < th dose independent rect. 21 17
558 111.27 precipitation 0.1 270 < th dose independent rect. 8 15
559 111.27 precipitation 0.1 270 < th dose dependent rect. 8 15
578 111.34 atmosphere 995.0 270 > th dose independent rect. 6 8
579 111.34 atmosphere 1015.0 270 < th dose independent rect. 6 8
580 111.34 temperature 10.0 270 > th dose independent rect. 14 16
587 111.39 humidity 90.0 270 < th dose independent rect. 14 3
600 111.46 atmosphere 1015.0 270 < th dose independent rect. 18 7
620 111.58 temperature 10.0 10 > th dose independent rect. 14 7
622 111.58 atmosphere 1010.0 10 < th dose independent rect. 14 7
624 111.58 temperature 10.0 10 > th dose independent rect. 21 17
625 111.58 atmosphere 995.0 10 > th dose independent rect. 21 17
650 111.73 temperature 30.0 90 < th dose dependent rect. 1 18
653 111.74 atmosphere 995.0 270 > th dose independent rect. 18 7
664 111.78 wind 1.0 10 > th dose independent rect. 14 7
665 111.78 wind 9.0 270 < th dose independent rect. 1 17
688 111.85 radiation 40.0 270 < th dose independent rect. 14 16
690 111.86 atmosphere 1015.0 10 < th dose independent rect. 21 17
707 111.93 precipitation 0.1 30 < th dose independent rect. 14 7
708 111.93 precipitation 0.1 30 < th dose dependent rect. 14 7
710 111.95 humidity 50.0 270 > th dose independent rect. 7 6
734 112.04 precipitation 0.1 270 < th dose independent rect. 18 7
735 112.04 precipitation 0.1 270 < th dose dependent rect. 18 7
748 112.15 wind 9.0 270 < th dose independent rect. 14 16
750 112.16 radiation 1.0 270 > th dose independent rect. 13 5
761 112.24 temperature 10.0 1440 > th dose independent rect. 15 7
764 112.24 temperature 10.0 1440 > th dose independent rect. 22 17
794 112.36 wind 1.0 270 > th dose independent rect. 6 7
814 112.47 humidity 50.0 270 > th dose dependent rect. 23 9
821 112.53 precipitation 0.1 270 < th dose independent rect. 1 17
823 112.53 precipitation 0.1 270 < th dose dependent rect. 1 17
831 112.56 radiation 40.0 10 < th dose dependent rect. 14 20
841 112.63 wind 9.0 10 < th dose independent rect. 14 7
896 112.83 atmosphere 1015.0 270 < th dose independent rect. 24 8
944 113.12 temperature 30.0 10 < th dose dependent rect. 2 17
973 113.28 radiation 1.0 270 > th dose independent rect. 13 16
974 113.28 wind 9.0 270 < th dose dependent rect. 14 3
990 113.31 precipitation 0.1 270 < th dose independent rect. 14 16
993 113.31 precipitation 0.1 270 < th dose dependent rect. 14 16