Os04g0653400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAD-binding domain containing protein.
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Os04g0653400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAD-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.44 | 0.246 | 11.1 | -0.248 | 0.587 | 0.405 | -0.0824 | -0.892 | 0.0923 | 7.99 | 27.1 | 5556 | -- | -- |
| 27.62 | 0.245 | 11 | -0.0177 | 0.601 | 0.297 | -0.0711 | -- | 0.151 | 7.94 | 28.09 | 5533 | -- | -- |
| 27.45 | 0.244 | 11.1 | -0.264 | 0.584 | 0.409 | -- | -0.966 | 0.098 | 7.96 | 27.43 | 5579 | -- | -- |
| 27.61 | 0.245 | 11 | -0.0115 | 0.59 | 0.304 | -- | -- | 0.15 | 8 | 27.69 | 5502 | -- | -- |
| 45.26 | 0.313 | 11.1 | -0.509 | -- | 0.546 | -- | -2.28 | 0.127 | -- | 29.25 | 5748 | -- | -- |
| 31.68 | 0.264 | 11 | 0.0853 | 0.591 | -- | -0.0877 | -- | 0.139 | 7.81 | -- | -- | -- | -- |
| 31.7 | 0.264 | 11 | 0.0829 | 0.591 | -- | -- | -- | 0.139 | 7.79 | -- | -- | -- | -- |
| 46 | 0.316 | 11 | -0.00295 | -- | 0.313 | -- | -- | 0.186 | -- | 29.2 | 5702 | -- | -- |
| 27.62 | 0.245 | 11 | -- | 0.589 | 0.302 | -- | -- | 0.152 | 8.01 | 27.73 | 5502 | -- | -- |
| 50.63 | 0.332 | 11 | 0.09 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 31.89 | 0.264 | 11 | -- | 0.592 | -- | -- | -- | 0.13 | 7.78 | -- | -- | -- | -- |
| 45.98 | 0.316 | 11 | -- | -- | 0.298 | -- | -- | 0.181 | -- | 29.2 | 5731 | -- | -- |
| 50.84 | 0.333 | 11 | -- | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.00 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 3 | 27.03 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 8 | 27.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 14 | 27.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 31 | 27.40 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 33 | 27.41 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 56 | 27.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 60 | 27.50 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 14 |
| 64 | 27.52 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 69 | 27.52 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 15 |
| 82 | 27.56 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 5 |
| 85 | 27.56 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 110 | 27.61 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 135 | 27.62 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 219 | 27.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 221 | 27.67 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 248 | 27.70 | temperature | 30 | 4320 | < th | dose independent | sin | 13 | NA |
| 255 | 27.71 | temperature | 30 | 4320 | > th | dose independent | sin | 13 | NA |
| 271 | 27.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 297 | 27.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 298 | 27.74 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 8 |
| 320 | 27.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 321 | 27.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 333 | 27.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 355 | 27.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 408 | 27.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 19 |
| 427 | 27.78 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 433 | 27.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 16 |
| 445 | 27.78 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 22 |
| 463 | 27.79 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 486 | 27.80 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 606 | 27.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 607 | 27.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 616 | 27.80 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 618 | 27.81 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 780 | 27.81 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 833 | 27.82 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 20 |
| 919 | 27.83 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 933 | 27.84 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 1 |