Os04g0647800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycerol kinase 2 (EC 2.7.1.30).
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Os04g0647800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycerol kinase 2 (EC 2.7.1.30).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.85 | 0.387 | 11.8 | 0.305 | 0.688 | 0.635 | -0.479 | -0.0172 | 0.285 | 19.8 | 20 | 768 | -- | -- |
| 67.84 | 0.384 | 11.8 | 0.306 | 0.689 | 0.639 | -0.48 | -- | 0.285 | 19.8 | 20.06 | 781 | -- | -- |
| 68.32 | 0.385 | 11.8 | 0.306 | 0.695 | 0.599 | -- | -0.137 | 0.284 | 19.6 | 20.2 | 793 | -- | -- |
| 68.42 | 0.385 | 11.8 | 0.318 | 0.7 | 0.649 | -- | -- | 0.284 | 19.6 | 20.1 | 803 | -- | -- |
| 93.4 | 0.45 | 11.8 | 0.267 | -- | 0.726 | -- | -0.105 | 0.239 | -- | 20.11 | 708 | -- | -- |
| 78.19 | 0.415 | 11.8 | 0.54 | 0.758 | -- | -0.528 | -- | 0.414 | 20.1 | -- | -- | -- | -- |
| 78.94 | 0.416 | 11.8 | 0.557 | 0.762 | -- | -- | -- | 0.414 | 19.9 | -- | -- | -- | -- |
| 93.21 | 0.45 | 11.8 | 0.259 | -- | 0.797 | -- | -- | 0.246 | -- | 20.01 | 712 | -- | -- |
| 70.49 | 0.391 | 11.8 | -- | 0.696 | 0.808 | -- | -- | 0.235 | 19.5 | 19.6 | 858 | -- | -- |
| 110.55 | 0.491 | 11.8 | 0.548 | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
| 87.11 | 0.437 | 11.8 | -- | 0.759 | -- | -- | -- | 0.352 | 19.9 | -- | -- | -- | -- |
| 94.44 | 0.453 | 11.8 | -- | -- | 0.949 | -- | -- | 0.208 | -- | 19.66 | 718 | -- | -- |
| 118.49 | 0.508 | 11.8 | -- | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.75 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 2 | 60.17 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 7 |
| 4 | 60.36 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 8 | 60.67 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 19 | 61.16 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 20 | 61.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 25 | 61.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 29 | 61.39 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 8 |
| 46 | 61.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 53 | 61.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 62 | 61.92 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 82 | 62.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 17 |
| 89 | 62.32 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 15 |
| 102 | 62.43 | temperature | 20.0 | 720 | > th | dose independent | sin | 6 | NA |
| 105 | 62.46 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 165 | 63.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 179 | 63.18 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 3 |
| 191 | 63.26 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 239 | 63.57 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 10 |
| 297 | 63.96 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 331 | 64.17 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 339 | 64.22 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 19 |
| 348 | 64.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 430 | 64.90 | temperature | 25.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 433 | 64.92 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 523 | 65.53 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 571 | 65.77 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 583 | 65.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 586 | 65.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 590 | 65.86 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 596 | 65.86 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 597 | 65.86 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 606 | 65.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 623 | 65.96 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 10 |
| 638 | 66.04 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 643 | 66.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 19 |
| 651 | 66.08 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 690 | 66.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 707 | 66.34 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 710 | 66.34 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 712 | 66.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 730 | 66.44 | wind | 5.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 734 | 66.45 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 21 |
| 764 | 66.56 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 787 | 66.68 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 19 |
| 798 | 66.71 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 4 |
| 799 | 66.72 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 803 | 66.73 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 804 | 66.73 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 17 |
| 805 | 66.73 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 819 | 66.77 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 22 | 8 |
| 825 | 66.78 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 832 | 66.79 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 839 | 66.81 | wind | 5.0 | 90 | < th | dose independent | rect. | 20 | 9 |
| 865 | 66.87 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 868 | 66.87 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 883 | 66.90 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 884 | 66.90 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 885 | 66.90 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 896 | 66.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 899 | 66.94 | wind | 5.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 900 | 66.94 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 10 |
| 903 | 66.94 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 907 | 66.95 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 917 | 66.97 | humidity | 50.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 919 | 66.98 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 924 | 66.99 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 937 | 67.01 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 945 | 67.03 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 949 | 67.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 952 | 67.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 953 | 67.04 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 954 | 67.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 20 |
| 958 | 67.05 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 965 | 67.08 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 967 | 67.09 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 971 | 67.09 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 978 | 67.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 982 | 67.11 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 984 | 67.12 | radiation | 1.0 | 90 | > th | dose independent | rect. | 9 | 9 |