BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0647800 Os04g0647800|AK065350
(529 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80460.1 | chr1:30246960-30249055 REVERSE LENGTH=523 805 0.0
>AT1G80460.1 | chr1:30246960-30249055 REVERSE LENGTH=523
Length = 522
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/528 (72%), Positives = 443/528 (83%), Gaps = 10/528 (1%)
Query: 3 EEVYVASIDQGTTSTRFIVYDRHAKPVASHQLEFKQHYPEAGWVEHDPMEIMESVKICMA 62
E ++ SIDQGTTSTRFI+YD A+PVASHQ+EF Q YPEAGWVEHDPMEI+ESVK+C+A
Sbjct: 4 ENGFIGSIDQGTTSTRFIIYDHDARPVASHQVEFTQFYPEAGWVEHDPMEILESVKVCIA 63
Query: 63 KALDKAAADGHNMDVGLKAIGITNQRETTVMWSKSTGLPLYNAIVWMDARTSPICRRLES 122
KALDKA ADGHN+D GLKAIG+T+QRETTV+WSKSTGLPL+ AIVWMDARTS ICRRLE
Sbjct: 64 KALDKATADGHNVDGGLKAIGLTDQRETTVVWSKSTGLPLHKAIVWMDARTSSICRRLEK 123
Query: 123 DLSGGRTHFVETCGLAISTYFSALKVLWLIENVDAVKNAVRAGDALFGTIDTWLIWNLTG 182
+LSGGR+HFVE+CGL ISTYFSA+K+LWL+ENVD VK+A++ GDA+FGTIDTWLIWN+TG
Sbjct: 124 ELSGGRSHFVESCGLPISTYFSAMKLLWLMENVDDVKDAIKKGDAIFGTIDTWLIWNMTG 183
Query: 183 GIGGTDRDGNKVFGHHVTDCSNASRTMLMNLKALDWDKPTLETLGIPAEILPKIISNSER 242
GI G G HVTD +NASRTMLMNLK L WD+ TL+TLGIPAEILPKI+SNSE
Sbjct: 184 GING---------GLHVTDVTNASRTMLMNLKTLSWDQDTLKTLGIPAEILPKIVSNSEV 234
Query: 243 IGVVANGFPLAGVPIAGCLGDQHAAMLGQLCQKGEAKSTYGTGAFILLNTGEEPTQSSHG 302
IG + G+P+ G+ IAGCLGDQHAAMLGQ C+KGEAKSTYGTGAFILLNTGE P +S HG
Sbjct: 235 IGEICKGWPIPGIKIAGCLGDQHAAMLGQACRKGEAKSTYGTGAFILLNTGEVPIKSGHG 294
Query: 303 LLSTIAYKLGPSAPTNYALEGSIAIAGAAVQWLRDSLGIISTAADIEKLADTVQDSGGIY 362
LL+T+AYKLGP A TNYALEGSIAIAGAAVQWLRDSLGII +A++IE LA V +GG+Y
Sbjct: 295 LLTTLAYKLGPQAQTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIEDLAAMVDSTGGVY 354
Query: 363 FVPAFNGLFAPWWRDDARGICIGITRFTNKGHIARAVLESMCFQVNDVLSSMHKDAGEAG 422
FVPAFNGLFAPWWR+DARG+CIGITRFTNK HIARAVLESMCFQV DVL SM+KDAGE G
Sbjct: 355 FVPAFNGLFAPWWREDARGVCIGITRFTNKSHIARAVLESMCFQVKDVLDSMNKDAGEKG 414
Query: 423 EVKSAEGEFLLRVDGGATVNNLLMQIQADLLGSPVVRPADIETTXXXXXXXXXXXXXXWS 482
+ + +GEFLLRVDGGAT NNLLMQIQADL+GSPVVRP DIETT W
Sbjct: 415 SLNNGKGEFLLRVDGGATANNLLMQIQADLMGSPVVRPVDIETTALGAAYAAGLAVGFWK 474
Query: 483 KEQIF-AGLHKENTRVFRPKLDEAHRRKRADSWYKAVSRSFDLADLSL 529
+ IF +G +N++VFRP ++E R+K+ SW KAV R+FDLADLS+
Sbjct: 475 EADIFESGEKAKNSKVFRPAMEEGIRKKKVASWCKAVERTFDLADLSI 522
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,084,722
Number of extensions: 447831
Number of successful extensions: 898
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 426
Effective length of database: 8,282,721
Effective search space: 3528439146
Effective search space used: 3528439146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)