Os04g0644400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Proline-rich-like protein.
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Os04g0644400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Proline-rich-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 566.99 | 1.12 | 3.51 | -1.47 | 0.0177 | 2.12 | 1.78 | -6.97 | -0.317 | 4.3 | 0.9984 | 10 | 15 | 21 |
| 624.41 | 1.16 | 3.53 | -1.88 | 0.195 | 2.15 | -4.3 | -- | -0.411 | 12.3 | 9.532 | 19 | 15.7 | 20.8 |
| 574.9 | 1.12 | 3.51 | -1.47 | 0.0656 | 2.12 | -- | -7.54 | -0.348 | 5.82 | 1.469 | 10 | 15.1 | 20.9 |
| 702.94 | 1.23 | 3.52 | -1.87 | 0.33 | 2.06 | -- | -- | -0.441 | 9.76 | 9.971 | 19 | 15 | 21.5 |
| 575.1 | 1.12 | 3.52 | -1.45 | -- | 2.11 | -- | -7.55 | -0.334 | -- | 1.643 | 10 | 15.1 | 20.9 |
| 695.9 | 1.24 | 3.54 | -1.7 | 0.975 | -- | -4.11 | -- | -0.575 | 11.8 | -- | -- | -- | -- |
| 767 | 1.3 | 3.55 | -1.87 | 1.02 | -- | -- | -- | -0.597 | 11 | -- | -- | -- | -- |
| 706.53 | 1.24 | 3.53 | -1.86 | -- | 2.28 | -- | -- | -0.421 | -- | 5.817 | 19 | 15.1 | 21.4 |
| 794.99 | 1.31 | 3.48 | -- | 0.325 | 1.98 | -- | -- | -0.259 | 10.1 | 7.063 | 19 | 15 | 21.7 |
| 831.3 | 1.35 | 3.57 | -1.89 | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
| 859.26 | 1.37 | 3.5 | -- | 1.03 | -- | -- | -- | -0.389 | 11.1 | -- | -- | -- | -- |
| 797.29 | 1.32 | 3.49 | -- | -- | 2.32 | -- | -- | -0.195 | -- | 6.102 | 19 | 15.7 | 21 |
| 925.88 | 1.42 | 3.52 | -- | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 567.36 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 8 | 577.06 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 20 | 577.71 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 86 | 585.66 | radiation | 20.0 | 30 | > th | dose independent | rect. | 16 | 20 |
| 87 | 586.00 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 5 |
| 104 | 588.83 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 142 | 593.59 | radiation | 1.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 151 | 595.51 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 178 | 596.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 187 | 598.28 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 194 | 599.75 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 198 | 600.70 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 234 | 602.65 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 253 | 603.24 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 254 | 603.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 255 | 603.35 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 6 |
| 264 | 604.11 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 269 | 604.32 | humidity | 70.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 270 | 604.37 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 277 | 604.68 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 278 | 604.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 290 | 604.82 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 306 | 604.82 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 322 | 605.03 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 326 | 605.46 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 333 | 605.74 | radiation | 40.0 | 10 | < th | dose independent | sin | 7 | NA |
| 337 | 605.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 339 | 605.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 362 | 606.18 | humidity | 70.0 | 30 | < th | dose independent | rect. | 7 | 5 |
| 382 | 606.57 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 387 | 606.81 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 392 | 606.85 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 404 | 607.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 405 | 607.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 406 | 607.51 | radiation | 40.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 459 | 608.48 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 13 |
| 509 | 608.97 | radiation | 1.0 | 10 | > th | dose dependent | no | NA | NA |
| 576 | 609.48 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 631 | 610.43 | radiation | 20.0 | 30 | > th | dose independent | sin | 6 | NA |
| 637 | 610.63 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 691 | 611.39 | humidity | 70.0 | 10 | < th | dose independent | rect. | 15 | 21 |
| 846 | 612.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 847 | 612.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 4 |
| 849 | 612.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 850 | 612.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 4 |
| 899 | 613.36 | humidity | 70.0 | 30 | < th | dose independent | sin | 4 | NA |
| 936 | 614.27 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 2 |