Os04g0644300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0644300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.96 | 0.23 | 10.9 | 0.468 | 0.82 | 0.339 | -0.0312 | -1.42 | 0.146 | 20.1 | 20.02 | 3968 | -- | -- |
| 25.52 | 0.235 | 10.9 | 0.795 | 0.816 | 0.385 | -0.0196 | -- | 0.217 | 20.2 | 12.61 | 6493 | -- | -- |
| 23.96 | 0.228 | 10.9 | 0.463 | 0.816 | 0.341 | -- | -1.46 | 0.145 | 20.1 | 20.22 | 3860 | -- | -- |
| 25.22 | 0.234 | 10.9 | 0.816 | 0.833 | 0.377 | -- | -- | 0.242 | 20.1 | 10.06 | 4103 | -- | -- |
| 58.36 | 0.356 | 10.9 | -0.117 | -- | 0.896 | -- | -5.22 | 0.189 | -- | 26.41 | 3581 | -- | -- |
| 27.82 | 0.247 | 10.8 | 0.997 | 0.831 | -- | -0.0482 | -- | 0.319 | 20.2 | -- | -- | -- | -- |
| 27.83 | 0.247 | 10.8 | 0.999 | 0.831 | -- | -- | -- | 0.319 | 20.2 | -- | -- | -- | -- |
| 59.96 | 0.361 | 10.9 | 0.782 | -- | 0.512 | -- | -- | 0.188 | -- | 17.8 | 2139 | -- | -- |
| 29.63 | 0.254 | 10.9 | -- | 0.825 | 0.797 | -- | -- | -0.0302 | 20.2 | 3.203 | 47520 | -- | -- |
| 66.01 | 0.38 | 10.8 | 0.993 | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
| 54.1 | 0.344 | 10.9 | -- | 0.826 | -- | -- | -- | 0.208 | 20.3 | -- | -- | -- | -- |
| 66.68 | 0.38 | 10.9 | -- | -- | 0.812 | -- | -- | -0.0453 | -- | 2.618 | 46806 | -- | -- |
| 92 | 0.448 | 10.9 | -- | -- | -- | -- | -- | 0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 23.26 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 16 | 23.41 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 22 | 23.46 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 36 | 23.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 49 | 23.61 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 58 | 23.68 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 62 | 23.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 64 | 23.71 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 77 | 23.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 82 | 23.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 91 | 23.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 92 | 23.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 100 | 23.78 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 104 | 23.79 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 107 | 23.80 | humidity | 70 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 113 | 23.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 119 | 23.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 124 | 23.82 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 128 | 23.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 130 | 23.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 144 | 23.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 147 | 23.85 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 156 | 23.85 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 162 | 23.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 164 | 23.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 165 | 23.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 167 | 23.86 | wind | 9 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 175 | 23.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 177 | 23.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 178 | 23.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 192 | 23.88 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 194 | 23.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 200 | 23.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 217 | 23.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 225 | 23.89 | wind | 1 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 274 | 23.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 275 | 23.92 | temperature | 20 | 4320 | > th | dose independent | sin | 11 | NA |
| 277 | 23.92 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 281 | 23.92 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 286 | 23.92 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 303 | 23.93 | humidity | 60 | 43200 | > th | dose independent | sin | 8 | NA |
| 332 | 23.94 | humidity | 70 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 350 | 23.94 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 353 | 23.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 377 | 23.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 393 | 23.96 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 396 | 23.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 423 | 23.97 | humidity | 70 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 428 | 23.98 | humidity | 60 | 43200 | < th | dose independent | sin | 8 | NA |
| 443 | 23.98 | humidity | 70 | 43200 | < th | dose dependent | sin | 8 | NA |
| 447 | 23.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 541 | 24.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 576 | 24.02 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 591 | 24.03 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 610 | 24.03 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 617 | 24.03 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 641 | 24.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 666 | 24.04 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 683 | 24.05 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 697 | 24.05 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 736 | 24.06 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 753 | 24.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 760 | 24.07 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 762 | 24.07 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 763 | 24.07 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 788 | 24.08 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 796 | 24.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 836 | 24.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 846 | 24.09 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 858 | 24.09 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 922 | 24.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 12 |