Os04g0644100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sterile alpha motif homology domain containing protein.
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Os04g0644100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sterile alpha motif homology domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.35 | 0.66 | 3.72 | 0.193 | 0.867 | 0.845 | 0.784 | 2.47 | -0.304 | 9.9 | 50.76 | 1467 | -- | -- |
| 204.6 | 0.666 | 3.73 | 0.117 | 0.851 | 0.759 | 0.893 | -- | -0.294 | 9.81 | 49.82 | 1449 | -- | -- |
| 199.66 | 0.658 | 3.72 | 0.211 | 0.878 | 0.898 | -- | 2.69 | -0.3 | 9.87 | 51.29 | 1468 | -- | -- |
| 207.03 | 0.67 | 3.73 | 0.0691 | 0.874 | 0.76 | -- | -- | -0.308 | 9.86 | 49.62 | 1440 | -- | -- |
| 242.67 | 0.726 | 3.76 | 0.202 | -- | 1.26 | -- | 3.16 | -0.314 | -- | 50.93 | 1518 | -- | -- |
| 218.99 | 0.694 | 3.72 | 0.0288 | 0.865 | -- | 0.793 | -- | -0.312 | 9.72 | -- | -- | -- | -- |
| 221.38 | 0.697 | 3.72 | 0.059 | 0.861 | -- | -- | -- | -0.311 | 9.73 | -- | -- | -- | -- |
| 250.78 | 0.738 | 3.75 | 0.0713 | -- | 0.831 | -- | -- | -0.324 | -- | 49.77 | 1473 | -- | -- |
| 207.06 | 0.67 | 3.73 | -- | 0.871 | 0.723 | -- | -- | -0.333 | 9.84 | 50 | 1453 | -- | -- |
| 265.49 | 0.761 | 3.74 | 0.0509 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 221.47 | 0.696 | 3.72 | -- | 0.861 | -- | -- | -- | -0.317 | 9.73 | -- | -- | -- | -- |
| 250.87 | 0.738 | 3.75 | -- | -- | 0.796 | -- | -- | -0.332 | -- | 50 | 1467 | -- | -- |
| 265.56 | 0.761 | 3.74 | -- | -- | -- | -- | -- | -0.315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.72 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 193.13 | wind | 1 | 720 | < th | dose independent | rect. | 4 | 1 |
| 3 | 195.38 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 23 | 197.28 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 35 | 197.69 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 36 | 197.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 49 | 197.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 64 | 198.05 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 73 | 198.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 75 | 198.14 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 80 | 198.19 | temperature | 25 | 14400 | > th | dose independent | sin | 8 | NA |
| 86 | 198.22 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 94 | 198.25 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 109 | 198.34 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 116 | 198.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 130 | 198.44 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 148 | 198.52 | temperature | 20 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 162 | 198.58 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 172 | 198.60 | temperature | 25 | 14400 | < th | dose independent | sin | 8 | NA |
| 173 | 198.60 | temperature | 25 | 14400 | > th | dose dependent | rect. | 22 | 12 |
| 181 | 198.65 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 203 | 198.70 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 233 | 198.79 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 243 | 198.80 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 279 | 198.89 | humidity | 70 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 294 | 198.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 325 | 198.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 13 |
| 349 | 199.03 | temperature | 25 | 14400 | > th | dose dependent | sin | 8 | NA |
| 373 | 199.08 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 4 |
| 375 | 199.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 378 | 199.09 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 431 | 199.14 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 447 | 199.17 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 463 | 199.19 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 523 | 199.27 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 525 | 199.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 542 | 199.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 576 | 199.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 581 | 199.36 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 605 | 199.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 606 | 199.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 634 | 199.44 | humidity | 80 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 658 | 199.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 699 | 199.53 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 772 | 199.61 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 796 | 199.64 | temperature | 30 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 827 | 199.66 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 864 | 199.70 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 878 | 199.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 883 | 199.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 918 | 199.76 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 924 | 199.77 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 927 | 199.77 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 937 | 199.78 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 938 | 199.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 985 | 199.81 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 19 |