BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0644100 Os04g0644100|AK106954
         (188 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80520.1  | chr1:30276481-30277059 FORWARD LENGTH=193           92   2e-19
AT1G15760.1  | chr1:5425714-5426322 FORWARD LENGTH=203             86   1e-17
AT2G12462.1  | chr2:5050583-5051585 REVERSE LENGTH=250             80   6e-16

>AT1G80520.1 | chr1:30276481-30277059 FORWARD LENGTH=193
          Length = 192

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 48/58 (82%)

Query: 3  MDWYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILK 60
          MDW++WLS   L+ ++ YEY L FS NELE +D+AYF+HEFL SMG+S+AKHRLEILK
Sbjct: 1  MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILK 58



>AT1G15760.1 | chr1:5425714-5426322 FORWARD LENGTH=203
          Length = 202

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 47/56 (83%)

Query: 5  WYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILK 60
          W++WLS   L+ ++ +EY L FS+NELE +D++YFDHEFL SMG+S+AKHRLEILK
Sbjct: 5  WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILK 60



>AT2G12462.1 | chr2:5050583-5051585 REVERSE LENGTH=250
          Length = 249

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 45/58 (77%)

Query: 3  MDWYAWLSAARLDQAVAYEYALVFSRNELEADDLAYFDHEFLHSMGVSVAKHRLEILK 60
          MDW++WLS   LD  ++YEY L+F++ +L+ +D+A F+H FL  +GV+V KHR+EILK
Sbjct: 1  MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILK 58



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,069,095
Number of extensions: 86147
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 95
Effective length of database: 8,556,881
Effective search space: 812903695
Effective search space used: 812903695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)