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Os04g0635700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribbon-helix-helix domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0275) R2 : 0.809
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.89 (0.0784) R2dC : 0.678 R2C : 0.171
β3 : 2.37 (0.0677) R2dE : 0.61 R2E : 0.0997
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.341 (0.0579) R2dN8 : 0.0189 R2N8 : 0.0257
σ : 0.516
deviance : 122.68
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_____
C
peak time of C : 18.2
E
wheather : radiation
threshold : 3.23
memory length : 69
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.58
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.49 0.498 12.9 -0.0944 2.9 2.31 -0.886 -1.74 -0.349 18.3 3.356 70 2.26 --
122.58 0.516 12.9 -0.0735 2.88 2.27 -0.25 -- -0.353 18.3 3.479 63 2.34 --
114.08 0.497 12.9 -0.0692 2.89 2.34 -- -1.5 -0.349 18.2 3.31 69 2.47 --
122.59 0.516 12.9 -0.0581 2.89 2.36 -- -- -0.349 18.2 3.245 69 2.57 --
194.88 0.654 12.9 -0.0617 -- 2.54 -- -1.49 -0.477 -- 66.49 4 8.47 --
178.15 0.626 12.9 -0.106 2.71 -- -1.51 -- -0.503 21.4 -- -- -- --
186.54 0.64 12.9 -0.0501 2.72 -- -- -- -0.501 21.4 -- -- -- --
188.35 0.639 12.9 -0.0554 -- 2.68 -- -- -0.497 -- 369.7 31 8.88 --
122.68 0.516 12.9 -- 2.89 2.37 -- -- -0.341 18.2 3.23 69 2.58 --
620.34 1.16 12.9 -0.034 -- -- -- -- -0.51 -- -- -- -- --
186.6 0.639 12.9 -- 2.72 -- -- -- -0.496 21.4 -- -- -- --
186.64 0.636 12.9 -- -- 2.71 -- -- -0.505 -- 22040 5 8.63 --
620.37 1.16 12.9 -- -- -- -- -- -0.507 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.29 radiation 1.0 90 < th dose dependent sin 8 NA
2 114.62 radiation 1.0 90 < th dose independent sin 9 NA
6 117.02 radiation 1.0 90 > th dose independent sin 9 NA
35 123.95 radiation 1.0 90 < th dose dependent rect. 23 14
40 124.25 radiation 1.0 90 < th dose dependent rect. 23 12
41 124.29 radiation 1.0 90 < th dose independent rect. 23 14
49 124.59 radiation 1.0 90 < th dose independent rect. 23 12
111 130.74 radiation 1.0 90 > th dose independent rect. 5 3
182 132.58 precipitation 0.1 270 < th dose independent rect. 3 20
184 132.58 precipitation 0.1 270 < th dose dependent rect. 3 20
195 133.01 temperature 15.0 90 > th dose independent rect. 5 18
197 133.27 humidity 50.0 90 > th dose dependent rect. 23 6
201 133.38 temperature 10.0 270 > th dose dependent rect. 23 3
202 133.40 atmosphere 1015.0 90 < th dose independent rect. 23 6
205 133.57 atmosphere 1015.0 270 < th dose independent rect. 23 4
208 133.63 temperature 10.0 270 > th dose independent rect. 23 4
209 133.63 temperature 30.0 270 < th dose independent rect. 23 4
210 133.63 humidity 50.0 270 > th dose independent rect. 23 4
213 133.63 atmosphere 995.0 270 > th dose independent rect. 23 4
214 133.63 radiation 1.0 270 < th dose independent rect. 23 4
219 133.63 temperature 10.0 270 > th dose independent rect. 3 20
220 133.63 radiation 1.0 270 < th dose dependent rect. 23 4
225 133.66 wind 9.0 270 < th dose independent rect. 23 4
230 133.78 precipitation 0.1 270 < th dose independent rect. 23 4
231 133.78 precipitation 0.1 270 < th dose dependent rect. 23 4
233 133.82 precipitation 0.1 90 < th dose independent rect. 5 18
234 133.82 precipitation 0.1 90 < th dose dependent rect. 5 18
238 134.01 wind 9.0 90 < th dose independent rect. 23 6
239 134.01 temperature 10.0 90 > th dose independent rect. 23 6
240 134.01 temperature 30.0 90 < th dose independent rect. 23 6
241 134.01 humidity 50.0 90 > th dose independent rect. 23 6
244 134.01 atmosphere 995.0 90 > th dose independent rect. 23 6
245 134.01 radiation 20.0 90 < th dose independent rect. 23 6
250 134.08 radiation 40.0 90 < th dose dependent rect. 23 6
280 134.24 temperature 10.0 90 > th dose dependent rect. 23 6
288 134.48 wind 9.0 90 < th dose independent rect. 5 18
312 135.12 precipitation 0.1 270 < th dose independent rect. 3 6
313 135.12 precipitation 0.1 270 < th dose dependent rect. 3 6
320 135.29 radiation 1.0 90 > th dose independent rect. 18 17
334 135.38 wind 9.0 270 < th dose independent rect. 3 20
362 135.63 temperature 30.0 90 < th dose independent rect. 5 6
368 135.95 wind 7.0 270 < th dose independent rect. 3 6
371 136.02 radiation 1.0 90 < th dose dependent rect. 21 22
374 136.07 atmosphere 1000.0 90 > th dose independent rect. 5 18
377 136.11 temperature 30.0 270 < th dose independent rect. 3 6
380 136.26 radiation 1.0 90 > th dose dependent rect. 18 13
381 136.28 radiation 1.0 90 > th dose dependent rect. 5 2
387 136.37 wind 9.0 270 < th dose dependent rect. 22 5
409 136.61 atmosphere 1015.0 90 < th dose independent rect. 5 18
410 136.62 wind 5.0 270 < th dose independent rect. 4 3
412 136.66 wind 9.0 270 < th dose independent rect. 9 18
413 136.67 wind 9.0 270 < th dose dependent rect. 23 3
415 136.70 temperature 10.0 270 > th dose independent rect. 3 6
417 136.70 humidity 50.0 270 > th dose independent rect. 3 6
418 136.70 atmosphere 995.0 270 > th dose independent rect. 3 6
419 136.70 atmosphere 1015.0 270 < th dose independent rect. 3 6
420 136.70 temperature 10.0 270 > th dose independent rect. 9 18
424 136.80 temperature 15.0 90 > th dose dependent rect. 5 3
440 136.95 temperature 10.0 10 > th dose dependent rect. 24 5
451 137.11 wind 9.0 270 < th dose dependent rect. 4 3
460 137.25 wind 9.0 90 < th dose dependent rect. 5 6
462 137.29 atmosphere 995.0 270 > th dose independent rect. 3 20
464 137.30 wind 9.0 270 < th dose dependent rect. 3 6
494 137.63 precipitation 0.1 270 < th dose independent rect. 4 3
495 137.63 precipitation 0.1 270 < th dose dependent rect. 4 3
496 137.63 humidity 50.0 90 > th dose dependent rect. 11 18
525 137.75 wind 9.0 270 < th dose independent rect. 21 7
530 137.81 temperature 10.0 270 > th dose independent rect. 21 7
531 137.81 temperature 30.0 270 < th dose independent rect. 21 7
532 137.81 humidity 50.0 270 > th dose independent rect. 21 7
535 137.81 atmosphere 995.0 270 > th dose independent rect. 21 7
537 137.81 radiation 1.0 270 < th dose independent rect. 21 7
546 137.81 radiation 1.0 270 < th dose dependent rect. 21 7
560 137.93 humidity 80.0 10 > th dose independent rect. 24 5
580 138.07 humidity 50.0 10 > th dose dependent rect. 24 5
595 138.20 precipitation 0.1 10 < th dose independent rect. 5 19
597 138.20 precipitation 0.1 10 < th dose dependent rect. 5 19
608 138.29 atmosphere 1000.0 10 > th dose independent rect. 5 19
612 138.30 atmosphere 1015.0 10 < th dose independent rect. 24 5
616 138.33 temperature 10.0 270 > th dose independent rect. 4 3
618 138.33 temperature 30.0 270 < th dose independent rect. 4 3
619 138.33 humidity 50.0 270 > th dose independent rect. 4 3
621 138.33 atmosphere 995.0 270 > th dose independent rect. 4 3
622 138.33 atmosphere 1015.0 270 < th dose independent rect. 4 3
623 138.33 radiation 40.0 270 < th dose independent rect. 4 3
624 138.33 wind 9.0 10 < th dose independent rect. 5 19
625 138.33 temperature 10.0 270 > th dose independent rect. 7 21
626 138.34 precipitation 0.1 270 < th dose independent rect. 9 18
628 138.34 precipitation 0.1 270 < th dose dependent rect. 9 18
629 138.36 wind 9.0 270 < th dose independent rect. 7 21
643 138.38 radiation 40.0 90 < th dose independent rect. 5 6
646 138.39 wind 9.0 10 < th dose independent rect. 24 5
647 138.39 temperature 10.0 10 > th dose independent rect. 24 5
648 138.39 temperature 30.0 10 < th dose independent rect. 24 5
649 138.39 humidity 50.0 10 > th dose independent rect. 24 5
652 138.39 atmosphere 995.0 10 > th dose independent rect. 24 5
658 138.39 temperature 10.0 10 > th dose independent rect. 5 19
693 138.52 radiation 1.0 90 < th dose independent rect. 21 22
728 138.70 atmosphere 1015.0 270 < th dose independent rect. 3 19
732 138.74 atmosphere 995.0 270 > th dose dependent rect. 4 3
734 138.76 atmosphere 995.0 90 > th dose dependent rect. 5 6
739 138.79 wind 1.0 270 > th dose independent rect. 23 4
786 138.95 precipitation 0.1 270 < th dose independent rect. 21 7
790 138.95 precipitation 0.1 270 < th dose dependent rect. 21 7
806 139.11 atmosphere 1015.0 270 < th dose independent rect. 23 15
807 139.12 temperature 15.0 90 > th dose independent rect. 5 6
812 139.13 atmosphere 995.0 270 > th dose dependent rect. 3 6
815 139.16 atmosphere 995.0 90 > th dose dependent rect. 5 18
843 139.33 wind 9.0 10 < th dose dependent rect. 24 5
889 139.59 temperature 10.0 270 > th dose independent rect. 14 9
890 139.59 temperature 10.0 270 > th dose independent rect. 23 15
891 139.59 atmosphere 995.0 270 > th dose independent rect. 23 15
893 139.60 wind 1.0 270 > th dose independent rect. 14 9
923 139.69 atmosphere 1015.0 270 < th dose independent rect. 9 18
927 139.72 wind 9.0 270 < th dose independent rect. 23 15
959 139.82 humidity 50.0 90 > th dose dependent rect. 9 20
960 139.83 wind 9.0 10 < th dose dependent rect. 5 7
995 140.15 precipitation 0.1 90 < th dose independent rect. 5 6
997 140.15 precipitation 0.1 90 < th dose dependent rect. 5 6