BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0635700 Os04g0635700|AK062025
         (163 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21445.1  | chr4:11424781-11425590 FORWARD LENGTH=155          138   1e-33

>AT4G21445.1 | chr4:11424781-11425590 FORWARD LENGTH=155
          Length = 154

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/80 (81%), Positives = 71/80 (88%)

Query: 84  TFLSLEEAGLVEMSGLSTHERFLCRLTISSLNLLRVISEQEGVPIEELNAGLVCDWFVKD 143
           +FLSL EAGLVE+SGL  HE+FLCRLTISSLNLLRVISEQEG  IEELNAG +CDWF+KD
Sbjct: 73  SFLSLAEAGLVEISGLGAHEKFLCRLTISSLNLLRVISEQEGCSIEELNAGKICDWFLKD 132

Query: 144 KLKREQNVGSAVLQWDDPGF 163
           KLKRE N+ SAVLQWDDP F
Sbjct: 133 KLKREHNIESAVLQWDDPDF 152



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,916,088
Number of extensions: 58761
Number of successful extensions: 127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)