Os04g0628400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os04g0628400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.19 | 0.183 | 10.5 | 0.279 | 0.269 | -0.636 | -0.386 | -0.207 | -0.0644 | 2.34 | 21.07 | 8 | -- | -- |
| 15.16 | 0.183 | 10.5 | 0.268 | 0.28 | -0.494 | -0.414 | -- | -0.0787 | 2.25 | 22.8 | 6 | -- | -- |
| 15.58 | 0.185 | 10.5 | 0.318 | 0.285 | -0.556 | -- | -0.393 | -0.0687 | 2.27 | 22.65 | 6 | -- | -- |
| 15.79 | 0.186 | 10.5 | 0.281 | 0.279 | -0.489 | -- | -- | -0.0757 | 2.29 | 22.8 | 6 | -- | -- |
| 19.7 | 0.207 | 10.4 | 0.322 | -- | -0.495 | -- | -0.196 | -0.0415 | -- | 20.8 | 36 | -- | -- |
| 18.07 | 0.199 | 10.4 | 0.367 | 0.214 | -- | -0.404 | -- | -0.017 | 2.64 | -- | -- | -- | -- |
| 18.64 | 0.202 | 10.4 | 0.377 | 0.214 | -- | -- | -- | -0.0147 | 2.77 | -- | -- | -- | -- |
| 18.31 | 0.199 | 10.4 | 0.245 | -- | -0.551 | -- | -- | -0.083 | -- | 22.04 | 889 | -- | -- |
| 17.64 | 0.196 | 10.5 | -- | 0.295 | -0.617 | -- | -- | -0.118 | 2.39 | 22.81 | 77 | -- | -- |
| 21.3 | 0.216 | 10.4 | 0.386 | -- | -- | -- | -- | -0.00922 | -- | -- | -- | -- | -- |
| 22.39 | 0.221 | 10.5 | -- | 0.221 | -- | -- | -- | -0.0567 | 2.79 | -- | -- | -- | -- |
| 19.49 | 0.206 | 10.5 | -- | -- | -0.648 | -- | -- | -0.132 | -- | 22.66 | 1066 | -- | -- |
| 25.23 | 0.234 | 10.5 | -- | -- | -- | -- | -- | -0.0521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 4 | 15.32 | temperature | 20 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 23 | 15.36 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 27 | 15.37 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 18 |
| 28 | 15.37 | temperature | 20 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 30 | 15.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 130 | 15.45 | temperature | 20 | 10 | < th | dose dependent | no | NA | NA |
| 151 | 15.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 153 | 15.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 154 | 15.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 184 | 15.46 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 195 | 15.46 | temperature | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 196 | 15.46 | temperature | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 274 | 15.49 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 19 |
| 275 | 15.49 | temperature | 20 | 270 | < th | dose independent | rect. | 7 | 21 |
| 341 | 15.52 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 13 |
| 429 | 15.54 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 440 | 15.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 447 | 15.55 | temperature | 20 | 10 | < th | dose dependent | sin | 7 | NA |
| 469 | 15.56 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |
| 507 | 15.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 511 | 15.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 514 | 15.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 527 | 15.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 541 | 15.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 542 | 15.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 561 | 15.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 590 | 15.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 616 | 15.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 629 | 15.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 668 | 15.63 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 21 |
| 675 | 15.63 | temperature | 20 | 270 | < th | dose dependent | sin | 20 | NA |
| 679 | 15.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 708 | 15.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 768 | 15.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 811 | 15.66 | temperature | 20 | 720 | > th | dose independent | sin | 15 | NA |
| 816 | 15.66 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 18 |
| 850 | 15.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 856 | 15.67 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 14 |
| 861 | 15.67 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 862 | 15.67 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 863 | 15.67 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 913 | 15.68 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 17 |