BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0628400 Os04g0628400|AK066078
         (811 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          266   4e-71
AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691             99   7e-21

>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  266 bits (679), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 180/715 (25%), Positives = 315/715 (44%), Gaps = 106/715 (14%)

Query: 123 PVNDVITETLSDINSVTPSGN-----RFTSKVWKEFTPVYIEGKLQAADCIHCQKRLS-- 175
           P+ +   E  +D   V+P        +  S VW+ FT   +E   + A C  C +  +  
Sbjct: 39  PIEETALEVYNDTEMVSPETQPIKRRKKKSMVWEHFTIEAVEPNCRRAFCKGCNQSFAYS 98

Query: 176 -ANKFGGRSHLSRHLI--TCAXXXXXXXXQIHQKGLFYPSSVPSLKSRVQDELSPALTNG 232
             NK  G SHL RH+   TC                                  PAL + 
Sbjct: 99  NGNKVAGTSHLKRHIFKGTC----------------------------------PALIH- 123

Query: 233 KVQIAEYSSKLLRASSSGDSTPKPIRVVPAEHSVPTPDYTSLMKQRTSFVTTPAGQETSD 292
                           + D+   P+   P      TP       Q  +       Q+   
Sbjct: 124 ----------------THDNDNNPLMSTPYTPKTDTP-RRRYRSQNNASPYVAFNQDKCR 166

Query: 293 PDLVGMIALHGYPLSIVEHEEMMRFVKKLNPVVNLVSRNAMEEHCLTLFQKEKENIKGKI 352
            ++  MI +H YPL +V+H   + FV+ + P  + VS N ++  C+  +  EK+N+   +
Sbjct: 167 QEIAKMIIMHDYPLHMVQHPGFVSFVQSIQPHFDAVSFNNVQGDCVATYLAEKQNVMKSL 226

Query: 353 AHFSRRVSLSASIWTPDGPETTVNYLCLTAHYIDEDWKVHRIIIKFGMFWSAPADLERMI 412
                R  L+   WT    + T+ Y+ +TAHYID DWK+ +                +++
Sbjct: 227 EGIPGRFCLTLDFWTS---KLTLGYVFITAHYIDSDWKIQK----------------KLL 267

Query: 413 HCMEACVPESESGSYNVILDAIRDWNLDQKLLSLTSVGEVRGDTNTSLLKEMLIEKKCLP 472
           + +    PE++      + + + +W L+ KL ++T           ++  ++ I+   + 
Sbjct: 268 NVLMESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPASNSAVENIRPQLCIKNPGI- 326

Query: 473 IGGTLFNVACVDYVLNSI---VFKVQADILRLVGDIVMDFLVSLTQQQLLEVISQTGLKC 529
           + G L    CV     S+   V +   D+++ + D V     S + ++    + +  L+ 
Sbjct: 327 LDGQLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQ-LQV 385

Query: 530 PQE------DAKWWHKLYFRLEVLLHFKKSFPSEERVSP--------EDTKTAESVCKIL 575
           P E      D   W+  Y  L      K+ F   +   P        ED +  E++C  L
Sbjct: 386 PSEKVLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKPPSAEDWRHVEALCTFL 445

Query: 576 RTIYRVIEVISSPSSPTANIYFNEIWKVRTVLQEEALNDHREIATVAMVMQEAFNEYWQN 635
           + ++  +  + S  +P+A  +F+E+WK ++ L      +   +  +A  MQE  ++YW++
Sbjct: 446 KPLFEAVSTLQSTGNPSAVTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVDKYWRD 505

Query: 636 SYLWLAIPVVLDPRFKFSFIEFRLKRAFGTDSASYLSVIRETVRELFNEYCHSLNQASDV 695
             L LA+ VV+DPRFK   +EF   + FG D+   +  + + + ELF EY   +   S  
Sbjct: 506 CSLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEY---MALPSPQ 562

Query: 696 VSNSEALCADDNDSLEDWDQHLHEQASRQLSSELDDYLEDGLVPRKDDFDILNWWMTHST 755
            + SE   AD    L D+D ++ E   + L SELD YL++ L+PR  +FD+L+WW  +  
Sbjct: 563 NTTSEGGKAD---GLSDFDTYIMETTGQNLKSELDQYLDETLLPRVQEFDVLDWWKQNKL 619

Query: 756 KYPTLATIARDILAMPASAVQSEAAFSSSGPVIPKHQSTLNIRTIEALVCTRDWM 810
           KYPTL+ +ARDIL++P SA   +  F      + +++++L   T+EAL+C R+W+
Sbjct: 620 KYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674



>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 119/541 (21%), Positives = 210/541 (38%), Gaps = 65/541 (12%)

Query: 299 IALHGYPLSIVEHEEMMRFVKKLNPVVNLVSRNAMEEHCLTLFQKEKENIKGKIAHFSRR 358
           +AL   P S V+   +    K L P + L      +     +F   + ++K  + H   +
Sbjct: 145 LALSSLPPSTVDETWLGNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSK 204

Query: 359 VSLSASIWTPDGPETTVNYLCLTAHYIDEDWKVHRIIIKFGMFWSAPADLERMIHCMEAC 418
           VS++ S W        + Y+ +T  +IDE+W  HR+++          D+ R+ +     
Sbjct: 205 VSVTLSFW---NSYENIFYMSVTGQWIDENWSSHRLLL----------DICRIPY----- 246

Query: 419 VPESESGSYNVILDAIRDWNLDQKLLSLTSVGEVRGDTNTSLLKEMLIEKKCLPIGGTLF 478
            P   S  YN +L  ++ + ++ ++L  T             LKE    +K LP      
Sbjct: 247 -PSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSENAIHACHSLKEYFDGQKVLP----FC 301

Query: 479 NVACVDYVLNSIVFKVQADILRLVGDIVMDFLVSLTQQ--------QLLEVISQTGLKCP 530
            + C    LN I+ +  A I  ++   V +F   L           QL     +   K P
Sbjct: 302 YIPCAAQTLNDIIDEGLATIKPIISK-VREFTQELNASTELSDDFIQLTTAYQEGNWKLP 360

Query: 531 QEDAKWWHKLYFRLEVLLHFKKSFPSEERVSP---EDTKTAESVCKILRTIYRVIEVISS 587
            + +  W   Y  + +L    KS  S  R +    E+     SV K   TI      + S
Sbjct: 361 IDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENRMMLSSVEKNAVTIVHNYLDLDS 420

Query: 588 PSSPT-------------ANIYFNEIWKVRTVLQEEALNDHREIATVAMVMQEAFNEYWQ 634
               T             A ++ + I ++ T  Q+   N          + Q+A +   Q
Sbjct: 421 FHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHNPDWLRTCAESMAQKARSYNTQ 480

Query: 635 NSYLWLAIPVVLDPRFKFSFIEFRLKRAFGTDSASYLSVIRETVRELFNEYCHSLNQASD 694
              ++  I  +LDPR K  +I          ++ +  S I E        Y  S +  S 
Sbjct: 481 VCNVFTYITAILDPRIKTEYIP---------ETINLESYIDEARSHFIRNYSSS-HFTSS 530

Query: 695 VVSNSEALCADDNDSLEDWDQHLHEQASR-----QLSSELDDYLEDGLVPRKDDFDILNW 749
           + S       D+      + + +  +  R      +  EL  YL + +VP + D  +L+W
Sbjct: 531 MTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSESIVPMQTD--VLDW 588

Query: 750 WMTHSTKYPTLATIARDILAMPASAVQSEAAFSSSGPVIPKHQSTLNIRTIEALVCTRDW 809
           W  +S +YP L+ +ARD LA+ A++   E  F   G  I K +  +   + ++++C R W
Sbjct: 589 WKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSW 648

Query: 810 M 810
           +
Sbjct: 649 I 649



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,594,601
Number of extensions: 818959
Number of successful extensions: 2308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 2
Length of query: 811
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 704
Effective length of database: 8,173,057
Effective search space: 5753832128
Effective search space used: 5753832128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)