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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0627200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heme exporter protein CcmA family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0302) R2 : 0.187
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.43 (0.442) R2dE : 0.18 R2E : 0.182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0927 (0.0637) R2dN8 : 0.00489 R2N8 : 0.00724
σ : 0.567
deviance : 148.4
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.006
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.3
open length of G : 2.81

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
135.1 0.546 3.1 0.189 0.0531 4.15 -0.00759 -10.4 0.123 7.01 0.993 11 24 3.07
146.96 0.565 3.09 0.216 0.0321 4.42 -0.234 -- 0.117 4.59 1.002 12 0.259 2.95
135.1 0.541 3.1 0.189 0.0531 4.15 -- -10.4 0.123 7 0.9931 11 24 3.07
147.01 0.565 3.09 0.218 0.0506 4.43 -- -- 0.117 7.97 1.005 12 0.29 2.82
135.23 0.542 3.1 0.187 -- 4.15 -- -10.4 0.123 -- 0.9813 10 24 3.15
178.38 0.626 3.08 0.216 0.145 -- -0.287 -- 0.155 3.87 -- -- -- --
178.62 0.626 3.08 0.22 0.144 -- -- -- 0.156 3.93 -- -- -- --
147.15 0.565 3.09 0.218 -- 4.43 -- -- 0.117 -- 1.006 12 0.284 2.81
148.26 0.567 3.09 -- 0.0521 4.43 -- -- 0.0924 7.68 1.005 12 0.315 2.78
179.76 0.626 3.08 0.226 -- -- -- -- 0.16 -- -- -- -- --
179.9 0.627 3.08 -- 0.148 -- -- -- 0.132 3.91 -- -- -- --
148.4 0.567 3.09 -- -- 4.43 -- -- 0.0927 -- 1.006 12 0.3 2.81
181.11 0.628 3.09 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.37 wind 1.0 10 < th dose dependent rect. 24 3
24 140.71 wind 7.0 1440 > th dose independent rect. 2 1
27 140.71 wind 7.0 1440 > th dose dependent rect. 2 1
47 143.18 wind 1.0 10 < th dose independent rect. 24 2
48 143.18 wind 1.0 10 < th dose independent rect. 22 4
100 147.82 wind 1.0 10 < th dose dependent sin 17 NA
120 150.68 wind 1.0 10 < th dose independent sin 17 NA
139 152.30 wind 1.0 10 < th dose independent rect. 7 20
168 155.99 wind 1.0 10 > th dose independent sin 17 NA
205 158.51 wind 1.0 270 < th dose dependent rect. 22 1
218 159.04 wind 1.0 270 < th dose independent rect. 22 1
314 162.14 temperature 20.0 90 > th dose dependent rect. 1 1
316 162.31 wind 1.0 10 < th dose independent rect. 4 23
342 163.12 temperature 20.0 10 > th dose dependent rect. 1 2
345 163.15 precipitation 0.1 270 > th dose independent rect. 2 1
346 163.15 precipitation 0.1 270 > th dose dependent rect. 2 1
348 163.19 wind 1.0 10 < th dose dependent rect. 24 9
381 164.12 wind 1.0 10 < th dose independent rect. 6 1
403 164.35 wind 1.0 10 < th dose dependent rect. 24 22
411 164.48 wind 1.0 10 < th dose dependent rect. 24 16
417 164.49 wind 1.0 10 < th dose dependent rect. 24 14
441 164.80 wind 1.0 270 < th dose dependent rect. 16 7
451 164.87 wind 1.0 10 < th dose dependent rect. 21 12
455 164.87 wind 1.0 10 < th dose dependent rect. 15 18
468 164.89 wind 1.0 10 < th dose dependent rect. 11 22
559 165.73 wind 1.0 10 < th dose dependent rect. 21 15
570 165.73 wind 1.0 10 < th dose dependent rect. 15 21
603 165.76 wind 1.0 10 < th dose dependent no NA NA
605 165.76 wind 1.0 10 < th dose dependent rect. 21 19
649 165.80 wind 1.0 10 > th dose independent rect. 1 23
680 166.12 atmosphere 1005.0 10 > th dose independent rect. 24 3
681 166.14 wind 1.0 10 < th dose independent rect. 24 9
689 166.21 wind 1.0 10 < th dose independent rect. 15 18
691 166.22 wind 1.0 10 < th dose independent rect. 21 12
704 166.23 wind 1.0 10 < th dose independent rect. 11 22
747 166.50 radiation 1.0 30 < th dose dependent rect. 5 1
760 166.60 temperature 20.0 10 > th dose independent rect. 24 3
796 166.99 wind 1.0 10 < th dose independent rect. 24 23
805 167.13 wind 1.0 10 < th dose independent rect. 24 16
807 167.14 wind 1.0 10 < th dose independent rect. 21 15
827 167.15 wind 1.0 10 < th dose independent rect. 24 14
852 167.16 wind 1.0 10 < th dose independent rect. 21 19
861 167.17 wind 1.0 10 < th dose independent no NA NA