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Os04g0626500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Disease resistance protein RGA2 (RGA2-blb) (Blight resistance protein RPI).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.1 (0.0232) R2 : 0.252
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.609 (0.0592) R2dC : 0.175 R2C : 0.155
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.33 (0.0488) R2dN8 : 0.0968 R2N8 : 0.0771
σ : 0.437
deviance : 87.35
__
_____
C
peak time of C : 7.98
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.49 0.411 8.14 -0.35 0.559 0.306 0.498 -0.286 0.162 7.88 1005 324 -- --
76.9 0.408 8.14 -0.347 0.555 0.3 0.469 -- 0.17 7.89 1005 324 -- --
77.14 0.409 8.14 -0.338 0.561 0.301 -- -0.282 0.156 8.02 1006 326 -- --
77.45 0.41 8.14 -0.328 0.551 0.31 -- -- 0.161 8.07 1006 372 -- --
93 0.449 8.16 -0.333 -- 0.386 -- -0.205 0.131 -- 1006 313 -- --
83.47 0.428 8.11 -0.351 0.613 -- 0.575 -- 0.293 7.79 -- -- -- --
84.39 0.43 8.11 -0.335 0.611 -- -- -- 0.292 7.94 -- -- -- --
93.24 0.45 8.16 -0.323 -- 0.384 -- -- 0.132 -- 1006 318 -- --
80.34 0.417 8.13 -- 0.546 0.308 -- -- 0.199 8.1 1006 364 -- --
104.76 0.478 8.12 -0.329 -- -- -- -- 0.3 -- -- -- -- --
87.35 0.437 8.1 -- 0.609 -- -- -- 0.33 7.98 -- -- -- --
96.02 0.456 8.15 -- -- 0.384 -- -- 0.167 -- 1006 318 -- --
107.61 0.484 8.12 -- -- -- -- -- 0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.10 temperature 20 270 > th dose independent rect. 24 7
4 76.51 atmosphere 1005 1440 > th dose independent rect. 21 1
6 76.58 wind 7 4320 < th dose independent rect. 15 1
7 76.62 wind 7 4320 > th dose independent rect. 15 1
17 77.09 atmosphere 1005 270 > th dose independent rect. 5 22
18 77.16 atmosphere 1005 270 < th dose independent rect. 12 19
20 77.19 radiation 1 1440 > th dose independent rect. 11 2
21 77.19 temperature 20 10 > th dose independent rect. 1 6
26 77.27 atmosphere 1005 270 > th dose independent rect. 14 22
29 77.30 temperature 20 10 > th dose independent rect. 1 9
47 77.43 humidity 80 720 > th dose dependent rect. 21 2
51 77.45 atmosphere 1005 1440 > th dose independent rect. 23 1
70 77.57 radiation 1 1440 < th dose independent rect. 11 2
71 77.57 radiation 1 1440 < th dose dependent rect. 11 2
74 77.59 temperature 30 270 < th dose independent sin 4 NA
93 77.66 atmosphere 1005 270 > th dose independent rect. 24 23
106 77.76 wind 1 1440 > th dose independent rect. 23 1
113 77.78 atmosphere 1005 720 < th dose independent rect. 15 13
114 77.79 atmosphere 1005 720 < th dose independent sin 15 NA
120 77.81 atmosphere 1005 270 > th dose independent no NA NA
124 77.82 atmosphere 1005 1440 < th dose independent rect. 21 1
132 77.83 humidity 80 1440 < th dose independent rect. 23 15
138 77.85 radiation 40 720 < th dose dependent rect. 12 5
139 77.85 temperature 15 270 > th dose dependent rect. 24 8
141 77.87 radiation 20 720 < th dose independent rect. 12 5
144 77.88 humidity 80 1440 < th dose independent rect. 1 13
173 77.95 atmosphere 1005 270 > th dose independent rect. 17 23
174 77.95 atmosphere 1005 270 > th dose independent rect. 21 23
181 77.97 humidity 80 1440 < th dose independent rect. 5 9
196 78.00 wind 1 4320 < th dose dependent rect. 6 1
199 78.01 wind 5 4320 > th dose dependent rect. 15 1
211 78.04 humidity 80 1440 < th dose independent sin 6 NA
232 78.07 humidity 80 1440 > th dose independent rect. 24 14
234 78.07 humidity 80 1440 < th dose independent rect. 21 17
254 78.10 temperature 30 270 > th dose independent sin 4 NA
260 78.10 temperature 30 270 < th dose dependent rect. 7 2
263 78.11 temperature 30 270 < th dose independent rect. 6 10
269 78.12 temperature 20 720 < th dose independent rect. 23 8
271 78.13 humidity 80 720 > th dose independent rect. 21 1
277 78.13 wind 1 1440 < th dose dependent rect. 6 6
278 78.13 radiation 10 1440 < th dose dependent rect. 7 9
286 78.14 radiation 10 1440 < th dose dependent rect. 8 7
288 78.15 wind 1 1440 < th dose independent rect. 6 3
291 78.15 temperature 30 270 < th dose independent rect. 7 16
294 78.16 atmosphere 1005 720 < th dose independent rect. 18 7
296 78.16 temperature 30 270 < th dose independent rect. 7 12
301 78.17 temperature 20 10 > th dose independent rect. 3 4
303 78.17 wind 1 1440 > th dose independent rect. 6 6
305 78.17 atmosphere 1005 270 < th dose independent rect. 23 21
319 78.19 temperature 20 270 > th dose independent rect. 3 2
331 78.20 wind 1 1440 > th dose independent rect. 6 4
345 78.21 temperature 30 270 > th dose independent rect. 18 21
353 78.22 radiation 10 720 > th dose dependent rect. 11 22
358 78.23 radiation 20 720 < th dose independent rect. 12 19
373 78.25 wind 1 1440 < th dose independent rect. 6 6
375 78.25 temperature 30 270 > th dose independent rect. 8 8
402 78.26 wind 1 1440 < th dose dependent rect. 6 3
416 78.28 atmosphere 1005 30 > th dose independent rect. 7 21
452 78.31 atmosphere 1005 30 > th dose independent rect. 18 22
457 78.32 humidity 80 1440 > th dose independent sin 5 NA
463 78.32 temperature 30 270 < th dose independent rect. 7 14
482 78.34 temperature 20 30 > th dose independent sin 8 NA
495 78.34 humidity 80 270 > th dose dependent rect. 20 11
511 78.36 atmosphere 1005 720 > th dose independent rect. 9 23
533 78.38 atmosphere 1005 30 > th dose independent rect. 7 23
546 78.39 radiation 10 4320 < th dose dependent rect. 19 10
548 78.40 radiation 20 720 < th dose independent rect. 14 1
549 78.40 temperature 30 270 < th dose independent rect. 7 5
621 78.44 temperature 30 270 < th dose independent rect. 14 22
674 78.49 atmosphere 1005 270 > th dose independent sin 20 NA
690 78.50 temperature 20 30 > th dose independent rect. 16 15
692 78.50 atmosphere 1005 10 < th dose independent rect. 13 18
710 78.51 temperature 25 720 < th dose dependent rect. 24 7
712 78.52 atmosphere 1005 270 < th dose independent no NA NA
718 78.52 atmosphere 1005 270 < th dose independent rect. 12 8
727 78.52 humidity 80 1440 > th dose dependent rect. 12 1
731 78.52 humidity 80 270 > th dose dependent rect. 12 19
732 78.53 radiation 20 1440 < th dose independent rect. 11 1
757 78.54 temperature 15 10 > th dose dependent rect. 1 9
762 78.55 temperature 20 720 > th dose independent rect. 19 12
771 78.55 humidity 50 720 > th dose dependent rect. 12 19
825 78.59 atmosphere 1005 30 > th dose independent rect. 7 18
828 78.59 atmosphere 1005 10 < th dose independent rect. 13 21
836 78.60 temperature 20 720 < th dose independent sin 8 NA
871 78.63 wind 9 4320 > th dose independent rect. 17 1
883 78.63 wind 7 4320 > th dose dependent rect. 17 1
968 78.69 temperature 20 720 < th dose independent rect. 3 4
974 78.69 humidity 80 1440 > th dose independent rect. 21 17
988 78.69 temperature 20 720 > th dose dependent rect. 6 1
997 78.70 atmosphere 1005 1440 < th dose independent rect. 23 1