Os04g0625900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Like-Sm ribonucleoprotein-related, core domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0625900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Like-Sm ribonucleoprotein-related, core domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.31 | 0.557 | 6.23 | 1.61 | 0.547 | -1.65 | -0.213 | 10.1 | -0.115 | 8.43 | 0.7164 | 3718 | -- | -- |
| 164.46 | 0.602 | 6.42 | 1.28 | 0.542 | 1.78 | -0.222 | -- | -0.158 | 8.34 | 0.7164 | 3718 | -- | -- |
| 140.18 | 0.551 | 6.23 | 1.63 | 0.543 | -1.67 | -- | 10.1 | -0.112 | 8.38 | 0.7521 | 4202 | -- | -- |
| 142.98 | 0.557 | 6.41 | 0.976 | 0.567 | 1.23 | -- | -- | -0.109 | 8.4 | 0.7218 | 2405 | -- | -- |
| 156.83 | 0.583 | 6.22 | 1.71 | -- | -1.99 | -- | 11.3 | -0.111 | -- | 0.9528 | 4202 | -- | -- |
| 167.58 | 0.607 | 6.42 | 1.29 | 0.549 | -- | -0.188 | -- | -0.161 | 8.25 | -- | -- | -- | -- |
| 167.69 | 0.606 | 6.42 | 1.29 | 0.55 | -- | -- | -- | -0.161 | 8.22 | -- | -- | -- | -- |
| 160.17 | 0.589 | 6.42 | 0.973 | -- | 1.2 | -- | -- | -0.0932 | -- | 0.78 | 2717 | -- | -- |
| 165.46 | 0.599 | 6.43 | -- | 0.557 | 1.58 | -- | -- | -0.177 | 8.34 | 0.6575 | 2758 | -- | -- |
| 184.38 | 0.634 | 6.44 | 1.29 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 211.41 | 0.68 | 6.45 | -- | 0.557 | -- | -- | -- | -0.305 | 8.05 | -- | -- | -- | -- |
| 182.66 | 0.629 | 6.44 | -- | -- | 1.57 | -- | -- | -0.172 | -- | 0.7651 | 2733 | -- | -- |
| 228.42 | 0.705 | 6.47 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.48 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 2 | 134.34 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 3 | 134.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 4 | 134.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 5 | 134.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 6 | 134.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 7 | 134.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 8 | 134.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 10 | 134.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 12 | 134.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 14 | 134.51 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 15 | 134.51 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 29 | 135.12 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 30 | 135.14 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 45 | 135.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 46 | 135.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 47 | 135.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 48 | 136.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 49 | 136.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 50 | 136.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 66 | 136.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 67 | 136.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 68 | 136.41 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 83 | 136.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 103 | 137.20 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 111 | 137.45 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 115 | 137.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 119 | 137.64 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 120 | 137.64 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 122 | 137.66 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 124 | 137.66 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 125 | 137.67 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 131 | 137.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 152 | 137.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 156 | 137.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 180 | 138.26 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 194 | 138.41 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 203 | 138.56 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 211 | 138.94 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 212 | 139.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 251 | 139.42 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 269 | 139.55 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 322 | 139.99 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 326 | 140.03 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 339 | 140.16 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 376 | 140.47 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 386 | 140.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 399 | 140.66 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 402 | 140.67 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 3 |
| 418 | 140.78 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 420 | 140.79 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 422 | 140.80 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 431 | 140.85 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 433 | 140.87 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 535 | 141.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 553 | 141.62 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 554 | 141.62 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 589 | 141.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 601 | 141.83 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 608 | 141.86 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 622 | 141.97 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 668 | 142.16 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 669 | 142.16 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 680 | 142.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 684 | 142.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 692 | 142.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 693 | 142.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 720 | 142.36 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 19 |
| 724 | 142.38 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 730 | 142.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 797 | 142.69 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 831 | 142.78 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 856 | 142.89 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 870 | 142.93 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 906 | 143.08 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 928 | 143.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 930 | 143.17 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 952 | 143.27 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 972 | 143.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 973 | 143.31 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 985 | 143.35 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 988 | 143.35 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 999 | 143.40 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |