BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0625900 Os04g0625900|AK071028
(452 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26990.1 | chr4:13551150-13554253 REVERSE LENGTH=475 75 9e-14
AT5G54920.2 | chr5:22302111-22305576 FORWARD LENGTH=523 70 2e-12
AT3G14010.1 | chr3:4637164-4640691 FORWARD LENGTH=596 66 4e-11
AT1G54170.1 | chr1:20221353-20224919 REVERSE LENGTH=588 57 2e-08
>AT4G26990.1 | chr4:13551150-13554253 REVERSE LENGTH=475
Length = 474
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 46 VCMVGLPVEVQVRDGSAYAGVLHTASVEGAYGVVLKKARKIANGNDNANIPLGAFVDSLV 105
+C++GL V V V+DGS ++G+ TASV+ +G+VLK AR G +N+ G+ VD+LV
Sbjct: 28 MCIIGLQVHVHVKDGSVFSGIFFTASVDNGFGIVLKDARITKKGTSISNVASGSVVDTLV 87
Query: 106 IHPDDLVQVIAKDFSL 121
I +VQ+IA+ SL
Sbjct: 88 ILSSTIVQIIAEGVSL 103
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 238 KESKLNPCARVFSPSFASS-RPVLAAAPSVNPI-YISNSVAGVPTGLPVFE---TNSVPG 292
KE KLNP A++FSPS+ P P V I YI ++ +P ++ N
Sbjct: 250 KEFKLNPEAKIFSPSYTKRLSPSPVGMPHVGNIAYIPSNTPMLPVPEAIYPEVVNNPYVP 309
Query: 293 GSSLSSKAVHYNNLAAANYAISPQYTQSTMGHNVSRLDPARIGTPYHPMQVGPAYISPSP 352
+ SK V Y N+ A + Q+ Q +G V+R P R YH +Q P ++PSP
Sbjct: 310 QAPPPSKFVPYGNVTAGHAVGGFQFPQHMIGPTVNRAQPQRYTAQYHSVQAAPMLVNPSP 369
Query: 353 QPVTGGKFNHVVYVHPFSQDVMHGAPVMPQGWSLPAPLKSHQASLQKFQG 402
Q V + +VYV SQD++ G P + S P P H L K QG
Sbjct: 370 Q-VMVARSGQLVYVQSVSQDLVQGTPPLSPMLSCPLPTAQHVQYL-KHQG 417
>AT5G54920.2 | chr5:22302111-22305576 FORWARD LENGTH=523
Length = 522
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 46 VCMVGLPVEVQVRDGSAYAGVLHTASVEGAYGVVLKKARKIANGNDNANIPLGAFVDSLV 105
+C++GL V V + DGS ++G+ +T S+E + +VLK A+ G +N+ G V++LV
Sbjct: 32 MCIIGLQVHVHINDGSVFSGIFYTVSLENEFSIVLKNAKLTKKGRSKSNVESGKIVETLV 91
Query: 106 IHPDDLVQVIAKDFSLHTK---DVCRTPVCDTVAASAY 140
I ++VQ++A+ SL + ++ V VA S++
Sbjct: 92 ILSSNIVQIVAEGVSLSSNVAGEIEGENVVSAVAVSSF 129
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 15/159 (9%)
Query: 230 ATPSKTIAKESKLNPCARVFSPSFASSRPVLAAAPSVNPIYISNSVAGVPTGLPVF---- 285
AT AKE KLNP A+ FSPS A + + +A + P+ ++N + VP+ P+
Sbjct: 288 ATDPDKKAKEFKLNPGAKTFSPSLA--KRLTSAHAGMTPV-VAN-MGYVPSNTPMLPVPE 343
Query: 286 ----ETNSVPGGSSLSS--KAVHYNNLAAANYAISPQYTQSTMGHNVSRLDPARIGTPYH 339
E P S SS K V Y NLA N + Q +G ++R P R T YH
Sbjct: 344 AVQPEIGISPFLSHASSPSKFVPYTNLATGNAGGGSHFPQHMVGPTINRGQPHRFTTQYH 403
Query: 340 PMQVGPAYISPSPQPVTGGKFNHVVYVHPFSQDVMHGAP 378
+Q P ++P+PQ V G+ ++Y+ P SQD++ GAP
Sbjct: 404 SVQPTPMLVNPNPQ-VMVGRSGQLMYMQPISQDLVQGAP 441
>AT3G14010.1 | chr3:4637164-4640691 FORWARD LENGTH=596
Length = 595
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 46 VCMVGLPVEVQVRDGSAYAGVLHTASVEGAYGVVLKKARKIANGNDNANIPLGAFV---- 101
C +G VEV +R+GS Y G+ H A+VE +G++LK A I +G + FV
Sbjct: 54 TCKIGHHVEVHLRNGSVYTGIFHAANVEKDFGIILKMACLIKDGTLRGHKSRSEFVRKPP 113
Query: 102 -DSLVIHPDDLVQVIAKDFSLHTKDV 126
+ +I D+LVQVIAKD S+ + ++
Sbjct: 114 SKTFIIPADELVQVIAKDLSVSSNNM 139
>AT1G54170.1 | chr1:20221353-20224919 REVERSE LENGTH=588
Length = 587
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 46 VCMVGLPVEVQVRDGSAYAGVLHTASVEGAYGVVLKKARKIANGNDNANIPLGAFVDSLV 105
C +G VEV +++GS Y+G+ H A+VE +G++LK A I + + + L+
Sbjct: 57 TCNIGHQVEVHLKNGSVYSGIFHAANVEKDFGIILKMACLIRDSRGTKSRTVSKPSSKLL 116
Query: 106 IHP-DDLVQVIAKDFSLHTKDVCRTPVCD 133
P D+LVQVIAKD L + V + C+
Sbjct: 117 KIPADELVQVIAKDLPLSSDSVSDSVQCE 145
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,779,003
Number of extensions: 387663
Number of successful extensions: 890
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 6
Length of query: 452
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 350
Effective length of database: 8,310,137
Effective search space: 2908547950
Effective search space used: 2908547950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)