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Os04g0625200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipid/glycerol acyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0418) R2 : 0.619
β1 : -1.58 (0.195) R2dD : 0.12 R2D : -0.0775
β2 : 2.37 (0.102) R2dC : 0.458 R2C : 0.444
β3 : 2.62 (0.196) R2dE : 0.159 R2E : 0.00581
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.78 (1.34) R2dD*E : 0.0797 R2D*E : -0.0829
γ1 : -0.788 (0.0963) R2dN8 : 0.113 R2N8 : -0.0422
σ : 0.729
deviance : 241.59
__
_____
C
peak time of C : 5.16
E
wheather : temperature
threshold : 24.92
memory length : 18
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.66
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.44 0.73 10 -1.62 2.37 2.39 0.429 -9.13 -0.821 5.18 24.93 19 2.69 --
264.55 0.763 9.89 -0.705 2.49 2 0.351 -- -0.483 5.29 25.07 19 2.87 --
241.59 0.729 10 -1.58 2.37 2.62 -- -9.78 -0.788 5.16 24.92 18 2.66 --
264.8 0.763 9.89 -0.703 2.48 2 -- -- -0.487 5.27 25.05 18 2.81 --
404.44 0.942 10.1 -1.55 -- 3.14 -- -4.16 -1.03 -- 20.8 21 1.57 --
317.04 0.835 9.84 -0.522 2.46 -- 0.0165 -- -0.29 5.64 -- -- -- --
317.04 0.834 9.84 -0.522 2.46 -- -- -- -0.29 5.64 -- -- -- --
307.45 0.817 9.92 -0.754 -- 2.69 -- -- -0.46 -- 4.983 26 0.969 --
277.63 0.78 9.87 -- 2.46 1.87 -- -- -0.397 5.31 25.05 18 2.81 --
630.16 1.17 9.88 -0.443 -- -- -- -- -0.231 -- -- -- -- --
324.22 0.842 9.83 -- 2.45 -- -- -- -0.232 5.65 -- -- -- --
316.99 0.829 9.91 -- -- 2.59 -- -- -0.342 -- -8.94 19 0.712 --
635.34 1.18 9.87 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.50 temperature 25.0 10 > th dose dependent sin 9 NA
2 244.31 temperature 25.0 10 > th dose independent rect. 5 6
5 246.29 temperature 20.0 270 > th dose dependent rect. 4 5
7 248.21 temperature 20.0 90 > th dose dependent rect. 4 7
14 250.00 temperature 25.0 270 > th dose independent rect. 6 2
16 251.37 radiation 1.0 270 < th dose dependent rect. 21 18
22 252.85 temperature 10.0 270 > th dose dependent rect. 3 7
23 253.16 radiation 1.0 270 < th dose independent rect. 21 18
27 254.09 radiation 1.0 270 > th dose independent sin 11 NA
31 254.47 temperature 20.0 10 > th dose dependent rect. 5 6
32 254.61 temperature 25.0 10 > th dose dependent rect. 18 17
33 254.75 radiation 1.0 270 < th dose independent sin 11 NA
34 254.82 temperature 25.0 30 > th dose independent rect. 1 10
39 254.90 radiation 1.0 270 < th dose dependent sin 11 NA
51 255.45 radiation 1.0 270 > th dose independent rect. 17 16
52 255.57 temperature 20.0 270 > th dose dependent rect. 6 2
66 256.71 radiation 1.0 270 < th dose dependent rect. 21 12
70 256.89 humidity 70.0 10 > th dose dependent rect. 22 19
74 257.30 radiation 20.0 30 < th dose dependent sin 8 NA
92 258.37 humidity 80.0 1440 > th dose independent rect. 11 3
97 258.50 radiation 1.0 270 < th dose independent rect. 21 13
102 258.81 temperature 25.0 10 > th dose dependent rect. 1 10
115 259.19 humidity 80.0 1440 < th dose independent rect. 11 3
117 259.27 precipitation 0.1 270 < th dose independent rect. 3 8
119 259.27 precipitation 0.1 270 < th dose dependent rect. 3 8
121 259.29 precipitation 0.1 270 < th dose independent rect. 16 17
122 259.29 precipitation 0.1 270 < th dose dependent rect. 16 17
136 259.95 humidity 60.0 10 > th dose dependent rect. 24 17
141 260.14 temperature 25.0 10 > th dose dependent rect. 21 14
152 260.64 radiation 1.0 90 > th dose independent rect. 4 7
169 260.90 humidity 80.0 1440 > th dose dependent rect. 11 3
181 261.45 radiation 1.0 90 < th dose independent rect. 23 17
204 262.36 temperature 25.0 30 > th dose independent rect. 17 18
208 262.42 humidity 90.0 30 < th dose independent rect. 17 18
210 262.48 humidity 90.0 90 < th dose independent rect. 5 6
224 263.06 wind 7.0 270 < th dose independent rect. 3 8
225 263.10 radiation 1.0 90 < th dose independent sin 7 NA
232 263.25 radiation 1.0 270 > th dose independent rect. 15 20
251 263.76 precipitation 0.1 270 < th dose independent rect. 15 20
252 263.76 precipitation 0.1 270 < th dose dependent rect. 15 20
263 264.01 humidity 90.0 90 < th dose independent rect. 3 8
266 264.04 precipitation 0.1 270 < th dose independent rect. 15 7
267 264.04 precipitation 0.1 270 < th dose dependent rect. 15 7
274 264.13 radiation 1.0 90 > th dose independent sin 7 NA
288 264.42 humidity 70.0 10 > th dose dependent sin 7 NA
306 264.97 humidity 80.0 1440 < th dose independent rect. 7 9
308 265.00 temperature 10.0 270 > th dose independent rect. 3 8
309 265.00 atmosphere 995.0 270 > th dose independent rect. 3 8
310 265.00 atmosphere 1015.0 270 < th dose independent rect. 3 8
311 265.00 temperature 10.0 270 > th dose independent rect. 11 16
315 265.04 wind 9.0 270 < th dose independent rect. 11 16
319 265.14 humidity 80.0 1440 > th dose independent rect. 7 9
323 265.22 humidity 90.0 10 < th dose dependent sin 9 NA
328 265.31 radiation 1.0 90 > th dose independent rect. 17 20
341 265.60 radiation 1.0 270 > th dose independent rect. 5 4
369 265.84 atmosphere 995.0 270 > th dose independent rect. 11 16
379 266.06 wind 7.0 90 < th dose independent rect. 17 18
385 266.12 atmosphere 1015.0 270 < th dose independent rect. 22 17
392 266.25 humidity 90.0 270 < th dose independent rect. 6 2
394 266.29 humidity 50.0 270 > th dose independent rect. 3 8
395 266.30 humidity 80.0 1440 > th dose independent sin 0 NA
412 266.57 atmosphere 995.0 270 > th dose independent rect. 23 16
417 266.62 humidity 50.0 90 > th dose independent rect. 11 6
425 266.71 humidity 80.0 1440 < th dose independent sin 1 NA
429 266.78 wind 1.0 90 > th dose independent rect. 11 6
437 266.85 humidity 80.0 1440 < th dose independent rect. 7 13
450 267.06 radiation 40.0 270 < th dose independent rect. 16 17
456 267.14 radiation 40.0 270 < th dose independent rect. 15 7
461 267.20 temperature 10.0 270 > th dose independent rect. 15 7
462 267.20 temperature 10.0 270 > th dose independent rect. 22 17
473 267.30 wind 1.0 270 > th dose independent rect. 9 7
483 267.33 temperature 10.0 90 > th dose independent rect. 11 6
484 267.33 atmosphere 1015.0 90 < th dose independent rect. 11 6
487 267.33 temperature 10.0 90 > th dose independent rect. 17 18
491 267.35 temperature 30.0 270 < th dose independent rect. 11 4
493 267.38 wind 9.0 90 < th dose independent rect. 11 6
496 267.41 wind 9.0 270 < th dose independent rect. 22 17
507 267.53 wind 9.0 270 < th dose independent rect. 15 7
539 267.77 atmosphere 995.0 270 > th dose independent rect. 9 7
566 268.03 humidity 90.0 10 < th dose dependent rect. 18 17
568 268.04 atmosphere 995.0 90 > th dose independent rect. 11 6
588 268.24 temperature 30.0 90 < th dose independent rect. 11 6
589 268.24 wind 9.0 270 < th dose independent rect. 9 7
590 268.25 temperature 10.0 270 > th dose independent rect. 9 7
591 268.25 atmosphere 1015.0 270 < th dose independent rect. 9 7
617 268.42 wind 1.0 270 > th dose independent rect. 15 7
620 268.44 humidity 80.0 10 > th dose independent rect. 24 16
658 268.78 humidity 50.0 270 > th dose independent rect. 11 16
663 268.81 precipitation 0.1 270 < th dose independent rect. 9 7
665 268.81 precipitation 0.1 270 < th dose dependent rect. 9 7
688 269.00 precipitation 0.1 90 < th dose independent rect. 11 6
690 269.00 precipitation 0.1 90 < th dose dependent rect. 11 6
697 269.08 atmosphere 995.0 90 > th dose independent rect. 17 18
698 269.09 precipitation 0.1 270 < th dose independent rect. 4 17
699 269.09 precipitation 0.1 270 < th dose dependent rect. 4 17
712 269.22 wind 9.0 10 < th dose independent rect. 17 7
727 269.35 atmosphere 1015.0 10 < th dose independent rect. 24 17
758 269.57 temperature 10.0 10 > th dose independent rect. 17 7
759 269.57 radiation 20.0 10 < th dose independent rect. 17 7
762 269.57 temperature 10.0 10 > th dose independent rect. 24 17
803 269.84 wind 9.0 270 < th dose dependent rect. 3 8
808 269.88 atmosphere 995.0 10 > th dose independent rect. 24 17
834 270.01 precipitation 0.1 10 < th dose independent rect. 17 7
835 270.01 precipitation 0.1 10 < th dose dependent rect. 17 7
841 270.04 radiation 40.0 10 < th dose dependent rect. 17 7
888 270.27 temperature 20.0 270 > th dose independent rect. 22 5
892 270.32 humidity 50.0 90 > th dose independent rect. 24 17
893 270.32 wind 7.0 270 < th dose independent rect. 15 19
921 270.52 wind 9.0 10 < th dose independent rect. 24 17
925 270.55 atmosphere 995.0 270 > th dose independent rect. 11 4
965 270.86 wind 9.0 270 < th dose independent rect. 11 4
993 271.13 humidity 50.0 90 > th dose independent rect. 17 18