BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0625200 Os04g0625200|009-136-F01
         (152 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30580.1  | chr4:14932515-14934489 REVERSE LENGTH=357           52   2e-07

>AT4G30580.1 | chr4:14932515-14934489 REVERSE LENGTH=357
          Length = 356

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 1   IIWYPLFGQLYVLANHLRIHRSNPAAAIESMKEVARAVTKNNLSLILFPEDTRSKTGRLL 60
           I   P+ G    +   + + R +P + ++ +K     + K   S+  FPE TRSK GRL 
Sbjct: 226 IFVIPIIGWAMSMMGVVPLKRMDPRSQVDCLKRCME-LLKKGASVFFFPEGTRSKDGRLG 284

Query: 61  PFKKGFVHTALQTRLPIVPMVVTGT 85
            FKKG    A +T + +VP+ + GT
Sbjct: 285 SFKKGAFTVAAKTGVAVVPITLMGT 309



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,392,295
Number of extensions: 130259
Number of successful extensions: 304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)