Os04g0619700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0619700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.57 | 0.307 | 8.48 | 0.812 | 0.678 | 1.21 | 0.767 | 1.66 | -0.239 | 12.2 | 24.2 | 83 | -- | -- |
| 46.01 | 0.316 | 8.45 | 1.05 | 0.65 | 1.02 | 0.313 | -- | -0.192 | 12.1 | 24.4 | 105 | -- | -- |
| 44.47 | 0.311 | 8.47 | 0.911 | 0.661 | 1.15 | -- | 1.12 | -0.227 | 12 | 24.2 | 108 | -- | -- |
| 46.39 | 0.317 | 8.45 | 1.06 | 0.642 | 1.03 | -- | -- | -0.194 | 12 | 24.3 | 109 | -- | -- |
| 52.93 | 0.339 | 8.49 | 0.87 | -- | 1.18 | -- | 1.4 | -0.259 | -- | 34.54 | 918 | -- | -- |
| 60.67 | 0.365 | 8.49 | 0.802 | 0.51 | -- | 0.266 | -- | -0.368 | 11.6 | -- | -- | -- | -- |
| 60.97 | 0.366 | 8.49 | 0.812 | 0.51 | -- | -- | -- | -0.367 | 11.5 | -- | -- | -- | -- |
| 54.15 | 0.343 | 8.46 | 1.13 | -- | 1.2 | -- | -- | -0.18 | -- | 42.34 | 905 | -- | -- |
| 72.74 | 0.399 | 8.49 | -- | 0.596 | 0.595 | -- | -- | -0.372 | 11.6 | 24.3 | 109 | -- | -- |
| 77.28 | 0.411 | 8.5 | 0.798 | -- | -- | -- | -- | -0.373 | -- | -- | -- | -- | -- |
| 78.34 | 0.414 | 8.51 | -- | 0.501 | -- | -- | -- | -0.458 | 11.4 | -- | -- | -- | -- |
| 83.95 | 0.427 | 8.5 | -- | -- | 0.754 | -- | -- | -0.365 | -- | 41.97 | 859 | -- | -- |
| 94.08 | 0.453 | 8.52 | -- | -- | -- | -- | -- | -0.461 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 4 | 37.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 5 | 37.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 13 | 37.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 59 | 39.17 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 69 | 39.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 70 | 39.38 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 74 | 39.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 124 | 40.34 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 125 | 40.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 20 |
| 226 | 41.39 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 283 | 41.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 286 | 41.84 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 396 | 42.41 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 418 | 42.46 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 444 | 42.59 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 481 | 42.74 | temperature | 30 | 270 | < th | dose dependent | sin | 13 | NA |
| 491 | 42.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 505 | 42.84 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 574 | 43.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 597 | 43.19 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 645 | 43.33 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 16 |
| 674 | 43.43 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 20 |
| 682 | 43.45 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 691 | 43.48 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 697 | 43.49 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 701 | 43.50 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 727 | 43.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 737 | 43.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 741 | 43.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 742 | 43.56 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 746 | 43.57 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 752 | 43.57 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 827 | 43.72 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 910 | 43.88 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |