FiT-DB / Search/ Help/ Sample detail

Os04g0618200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucose 4-epimerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.44 (0.028) R2 : 0.0446
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0589) R2dN8 : 0.0576 R2N8 : 0.0446
σ : 0.527
deviance : 127.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.23 0.434 8.49 -0.336 0.453 0.55 -1.38 3.93 0.199 3.32 31 79 -- --
98.08 0.465 8.41 0.302 0.501 0.574 -0.154 -- 0.359 3.33 64.9 11 -- --
89.68 0.441 8.47 -0.168 0.48 0.52 -- 3.35 0.232 2.94 34.5 80 -- --
97.93 0.461 8.41 0.314 0.5 0.573 -- -- 0.359 3.07 35.36 69 -- --
98.7 0.463 8.45 -0.0216 -- 1.07 -- 3.29 0.321 -- 36.11 34 -- --
101.19 0.472 8.43 0.193 0.659 -- -0.025 -- 0.279 3.03 -- -- -- --
101.19 0.471 8.43 0.194 0.659 -- -- -- 0.279 3.03 -- -- -- --
107.46 0.483 8.4 0.439 -- 1.14 -- -- 0.448 -- 40.76 65 -- --
100.23 0.466 8.43 -- 0.544 0.424 -- -- 0.308 3.06 50.94 67 -- --
126.08 0.525 8.43 0.222 -- -- -- -- 0.296 -- -- -- -- --
102.18 0.473 8.44 -- 0.663 -- -- -- 0.258 3.03 -- -- -- --
112.22 0.493 8.41 -- -- 0.994 -- -- 0.383 -- 46.05 62 -- --
127.38 0.527 8.44 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.10 wind 7 4320 > th dose independent rect. 17 2
2 81.24 wind 7 4320 > th dose dependent rect. 17 2
4 81.38 wind 7 4320 > th dose independent rect. 15 5
7 81.45 wind 7 4320 > th dose dependent rect. 15 4
13 81.82 wind 7 4320 < th dose independent rect. 17 3
15 81.85 wind 7 4320 < th dose independent rect. 15 5
20 82.00 radiation 10 4320 < th dose dependent rect. 24 5
35 82.50 radiation 20 1440 < th dose independent rect. 11 3
70 83.20 radiation 40 43200 < th dose dependent rect. 23 6
72 83.25 radiation 20 1440 < th dose dependent rect. 11 2
77 83.33 radiation 1 1440 > th dose independent rect. 10 3
90 83.54 radiation 20 1440 < th dose independent rect. 11 5
93 83.60 radiation 20 1440 < th dose independent rect. 11 12
96 83.61 radiation 20 1440 < th dose independent rect. 11 8
97 83.61 radiation 20 1440 < th dose independent rect. 11 10
109 83.64 radiation 20 1440 < th dose independent rect. 11 19
132 83.82 radiation 40 43200 < th dose dependent rect. 19 10
133 83.82 temperature 20 10 > th dose dependent rect. 9 20
135 83.85 radiation 20 1440 < th dose dependent rect. 11 7
141 83.91 temperature 10 10 > th dose dependent rect. 7 23
150 83.96 radiation 20 1440 < th dose dependent rect. 11 12
158 83.99 radiation 10 4320 < th dose dependent rect. 19 10
161 84.01 radiation 20 1440 < th dose dependent rect. 11 16
218 84.41 temperature 10 30 > th dose dependent rect. 23 23
252 84.56 radiation 1 1440 < th dose dependent rect. 9 7
277 84.64 radiation 1 1440 < th dose independent rect. 9 4
279 84.64 radiation 1 1440 < th dose dependent rect. 9 4
283 84.65 temperature 20 10 > th dose dependent rect. 9 16
325 84.80 radiation 20 1440 < th dose dependent sin 19 NA
392 84.90 temperature 10 30 > th dose dependent rect. 3 23
449 85.04 temperature 30 10 < th dose dependent sin 20 NA
462 85.07 radiation 10 4320 < th dose dependent rect. 3 2
481 85.09 radiation 1 1440 < th dose independent rect. 13 1
482 85.09 radiation 1 1440 < th dose dependent rect. 13 1
509 85.16 temperature 30 90 < th dose dependent sin 21 NA
513 85.19 radiation 1 1440 > th dose independent rect. 13 1
548 85.25 temperature 30 90 < th dose dependent rect. 13 23
557 85.27 radiation 30 43200 < th dose dependent rect. 3 2
565 85.29 radiation 1 43200 < th dose independent rect. 23 6
577 85.31 humidity 90 14400 > th dose independent rect. 5 2
582 85.32 wind 7 4320 > th dose independent sin 15 NA
583 85.32 radiation 20 1440 < th dose independent sin 18 NA
602 85.34 temperature 20 14400 < th dose dependent rect. 12 18
608 85.35 temperature 10 30 > th dose dependent rect. 21 23
620 85.37 temperature 30 90 < th dose dependent no NA NA
655 85.42 temperature 20 10 > th dose dependent rect. 9 13
662 85.43 temperature 20 14400 < th dose dependent rect. 20 9
670 85.44 temperature 20 14400 < th dose dependent rect. 18 11
685 85.45 temperature 30 90 < th dose dependent rect. 9 23
696 85.46 temperature 20 10 > th dose dependent rect. 9 11
722 85.51 humidity 90 14400 < th dose independent rect. 5 2
736 85.52 temperature 30 30 < th dose dependent rect. 19 23
738 85.53 temperature 10 90 > th dose dependent no NA NA
739 85.53 temperature 20 14400 < th dose dependent sin 12 NA
747 85.54 radiation 1 43200 < th dose independent rect. 19 10
759 85.55 temperature 20 14400 < th dose dependent rect. 24 22
768 85.56 temperature 20 14400 < th dose dependent rect. 21 19
805 85.59 temperature 20 14400 < th dose dependent rect. 1 16
808 85.59 temperature 20 14400 < th dose dependent rect. 1 18
849 85.61 wind 7 4320 < th dose independent sin 15 NA
866 85.61 temperature 30 30 < th dose dependent rect. 1 23
873 85.62 temperature 20 14400 < th dose dependent no NA NA
897 85.63 temperature 20 14400 < th dose dependent rect. 2 1
935 85.64 temperature 30 30 < th dose dependent rect. 15 23
954 85.66 temperature 20 14400 < th dose dependent rect. 2 3
971 85.67 temperature 20 14400 < th dose dependent rect. 4 1
985 85.67 temperature 30 30 < th dose dependent rect. 11 23
987 85.68 radiation 20 1440 > th dose independent rect. 11 5